Per a CDC/GTRI meeting on 10/22/2020, we have decided to examine the HL7 data dates more closely for the purpose of synthetic data generation. Generation around dates require special considerations because certain logical orders/relationships may need to be preserved when generating them synthetically (e.g. One can't be discharged from the hospital before being admitted).
The notebook explores the following:
# Imports
import collections
import numpy as np
import pandas as pd
import seaborn as sns
from itertools import combinations
# Options to display full tables instead of ellipses
pd.set_option("display.max_columns",50)
pd.set_option("display.max_rows",5000)
# Set path to HL7 Gen Core dataset
GEN_CORE = '../hl7_oct_2020/GenCore.csv'
# These are all of the variables which appear to be a date in the Hl7 data
date_vars = ['Birth_Date',
'Illness_Onset_Dt',
'Illness_End_Dt_str',
'Diag_Dt',
'Hosp_Admit_Dt',
'Hosp_Dis_Dt',
'Invest_Start_Dt',
'First_Elec_Submit_Dt',
'Elect_Notif_CDC_Dt',
'Report_Dt',
'Earliest_Cnty_Dt',
'Earliest_State_Dt',
'MMWR_Year',
'PHD_Notif_Dt',
'Message_Dt',
'msg_received_dttm',
'mvps_datetime_created',
'mvps_datetime_updated',
'current_record_flag', # Here and below are not dates but still needed for groupby operations
'Report_State_txt',
'Condition_Code_txt']
core_dts = pd.read_csv(GEN_CORE, usecols = date_vars, dtype = str)
# Apply restrictions that we intend to apply before generating synthetic data
# Exclude rows where current_record_flag is not 'Y'
core_dts = core_dts.loc[core_dts['current_record_flag'] == 'Y ', :]
core_dts = core_dts.drop(columns = 'current_record_flag')
# Exclude rows where report_dt is missing
#core_dts = core_dts.copy() # to avoid SettingWithCopyWarning
core_dts = core_dts.loc[np.logical_not(core_dts['Report_Dt'].isna()), :]
# Missingness "Heatmap" -- Missing is ivory-colored, completed is black
sns.set(rc={'figure.figsize':(16,32)})
sns.heatmap(core_dts.isnull(), cbar=False).figure.savefig("./figures/overall_missingness.png")
# Missing percentages by variable
core_dts.apply(lambda x: sum(x.isnull()) / core_dts.shape[0] * 100)
Birth_Date 8.176795 Illness_Onset_Dt 46.148770 Illness_End_Dt_str 99.107239 Diag_Dt 31.553860 Hosp_Admit_Dt 91.378257 Hosp_Dis_Dt 93.590160 Condition_Code_txt 0.006365 Invest_Start_Dt 21.117208 First_Elec_Submit_Dt 0.000000 Elect_Notif_CDC_Dt 0.000000 Report_Dt 0.000000 Earliest_Cnty_Dt 60.523010 Earliest_State_Dt 21.537012 MMWR_Year 0.029281 PHD_Notif_Dt 10.479194 Report_State_txt 0.000000 Message_Dt 0.000000 msg_received_dttm 0.000000 mvps_datetime_created 0.000000 mvps_datetime_updated 89.705935 dtype: float64
# So, we can set aside these dates that are never missing (or very rarely missing)
not_missing = ['First_Elec_Submit_Dt',
'Elect_Notif_CDC_Dt',
'Report_Dt',
'MMWR_Year',
'Message_Dt',
'msg_received_dttm',
'mvps_datetime_created']
missing = list(set(date_vars) - set(not_missing) - set(['current_record_flag', 'Report_State_txt', 'Condition_Code_txt']))
missing
['Birth_Date', 'Diag_Dt', 'Illness_Onset_Dt', 'Invest_Start_Dt', 'Illness_End_Dt_str', 'PHD_Notif_Dt', 'Earliest_Cnty_Dt', 'Earliest_State_Dt', 'mvps_datetime_updated', 'Hosp_Admit_Dt', 'Hosp_Dis_Dt']
# Define groupbys
# By diagnosis
dx = core_dts.groupby('Condition_Code_txt')
# By jurisdiction
dj = core_dts.groupby('Report_State_txt')
# By both
dx_dj = core_dts.groupby(['Report_State_txt', 'Condition_Code_txt'])
dj_dx = core_dts.groupby(['Condition_Code_txt', 'Report_State_txt'])
# Missingness by condition
missing_by_condition = pd.concat([dx[y].apply(lambda x: sum(x.isnull()) / len(x) * 100) for y in missing], axis = 1)
missing_by_condition['sample_size'] = dx.size().values
missing_by_condition
| Birth_Date | Diag_Dt | Illness_Onset_Dt | Invest_Start_Dt | Illness_End_Dt_str | PHD_Notif_Dt | Earliest_Cnty_Dt | Earliest_State_Dt | mvps_datetime_updated | Hosp_Admit_Dt | Hosp_Dis_Dt | sample_size | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Condition_Code_txt | ||||||||||||
| 2019 Novel Coronavirus | 0.000000 | 35.551664 | 29.597198 | 0.000000 | 100.000000 | 0.000000 | 15.236427 | 0.000000 | 49.970811 | 89.492119 | 94.220665 | 1713 |
| 2019 Novel Coronavirus (2019-nCoV) | 85.868850 | 66.410126 | 61.668360 | 27.724311 | 99.184052 | 0.700879 | 86.840218 | 86.816307 | 47.701596 | 92.541395 | 96.785522 | 66916 |
| 2019 Novel Coronavirus (COVID-19) | 0.000000 | 1.445783 | 6.024096 | 0.000000 | 42.650602 | 0.000000 | 1.686747 | 1.927711 | 88.433735 | 87.951807 | 92.530120 | 415 |
| 2019 Novel Coronavirus (nCoV) | 0.000000 | 96.815946 | 99.326948 | 96.815946 | 99.948227 | 100.000000 | 100.000000 | 98.757442 | 77.763396 | 99.456381 | 99.870567 | 3863 |
| 2019-nCoV | 0.386100 | 81.930502 | 77.683398 | 0.000000 | 90.617761 | 0.000000 | 47.837838 | 48.108108 | 92.471042 | 97.181467 | 98.648649 | 2590 |
| ACUTE FLACCID MYELITIS | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 60.000000 | 0.000000 | 10.000000 | 10 |
| AFM | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 |
| Acanthamoeba disease (excluding keratitis) | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 3 |
| Acute Flaccid Myelitis | 0.000000 | 100.000000 | 5.263158 | 26.315789 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 21.052632 | 26.315789 | 19 |
| Acute Flaccid Myelitis (AFM) | 0.000000 | 69.230769 | 30.769231 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 69.230769 | 100.000000 | 38.461538 | 61.538462 | 13 |
| Acute flaccid myelitis | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Anaplasma phagocytophilum | 37.637726 | 42.089026 | 14.514470 | 35.448803 | 99.911855 | 34.493903 | 77.758190 | 71.676216 | 80.064639 | 74.247099 | 77.038343 | 6807 |
| Anaplasma phagocytophilum infection | 0.000000 | 85.714286 | 71.428571 | 0.000000 | 95.238095 | 52.380952 | 23.809524 | 90.476190 | 95.238095 | 80.952381 | 85.714286 | 21 |
| Anaplasmosis | 0.000000 | 0.000000 | 20.000000 | 0.000000 | 100.000000 | 60.000000 | 0.000000 | 0.000000 | 40.000000 | 80.000000 | 80.000000 | 5 |
| Anaplasmosis phagocytophilum | 0.000000 | 22.727273 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 27.272727 | 0.000000 | 100.000000 | 59.090909 | 68.181818 | 22 |
| Animal Bites | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Anthrax | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 1 |
| BABESIOSIS | 0.000000 | 0.148920 | 31.012658 | 15.487714 | 100.000000 | 0.372301 | 0.595681 | 0.000000 | 98.808637 | 56.850335 | 72.710350 | 2686 |
| BOTULISM - INFANT | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 50.000000 | 0.000000 | 100.000000 | 2 |
| BRUCELLOSIS | 0.000000 | 0.000000 | 25.000000 | 6.250000 | 100.000000 | 0.000000 | 25.000000 | 0.000000 | 93.750000 | 43.750000 | 62.500000 | 16 |
| Babesia | 0.000000 | 10.526316 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 94.736842 | 94.736842 | 94.736842 | 19 |
| Babesiosis | 51.770956 | 37.750885 | 28.423849 | 23.494687 | 99.527745 | 20.188902 | 88.931523 | 71.517119 | 93.034238 | 66.499410 | 72.668241 | 3388 |
| Bacillus anthracis | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 |
| Botulism - Infant | 0.000000 | 33.333333 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 33.333333 | 0.000000 | 100.000000 | 16.666667 | 50.000000 | 6 |
| Botulism - Other | 0.000000 | 66.666667 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 66.666667 | 100.000000 | 33.333333 | 100.000000 | 3 |
| Brucella | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 84.615385 | 46.153846 | 69.230769 | 13 |
| Brucellosis | 1.807229 | 65.662651 | 19.277108 | 71.686747 | 99.397590 | 5.421687 | 20.481928 | 7.228916 | 98.192771 | 45.180723 | 57.228916 | 166 |
| Brucellosis not temporally/spatially clustered | 0.000000 | 60.000000 | 20.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 60.000000 | 100.000000 | 5 |
| CAMPYLOBACTERIOSIS | 0.077477 | 0.209189 | 9.932595 | 7.158906 | 100.000000 | 1.131169 | 29.503370 | 0.000000 | 88.672813 | 69.226001 | 76.880762 | 12907 |
| CHOLERA | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 33.333333 | 0.000000 | 100.000000 | 33.333333 | 33.333333 | 3 |
| COVID-19 | 3.598201 | 47.226387 | 33.733133 | 0.000000 | 66.416792 | 0.000000 | 77.661169 | 72.563718 | 65.517241 | 89.655172 | 93.103448 | 667 |
| COVID-19 (CORONA VIRUS) | 2.866242 | 100.000000 | 55.944798 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 942 |
| COVID-19 (CORONAVIRUS) | 1.481429 | 98.321983 | 74.836762 | 0.000000 | 100.000000 | 98.132416 | 100.000000 | 0.000000 | 83.135575 | 98.911746 | 99.571719 | 14243 |
| CP-CRE | 0.000000 | 21.311475 | 47.540984 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 73.770492 | 100.000000 | 50.819672 | 75.409836 | 61 |
| CP-CRE (Pre-2020)* | 0.602410 | 39.759036 | 5.421687 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 39.759036 | 100.000000 | 100.000000 | 100.000000 | 166 |
| CRYPTOSPORIDIOSIS | 0.040800 | 0.407997 | 6.160751 | 4.243166 | 100.000000 | 2.488780 | 37.576499 | 0.000000 | 85.475316 | 69.808242 | 77.723378 | 2451 |
| CYCLOSPORIASIS | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.763359 | 100.000000 | 0.000000 | 74.809160 | 68.702290 | 84.732824 | 131 |
| Campylobacter | 0.097962 | 33.398642 | 29.604232 | 0.000000 | 90.327847 | 0.000000 | 45.637409 | 9.326019 | 98.360763 | 84.038662 | 85.481975 | 15312 |
| Campylobacteriosis | 10.770109 | 58.539732 | 47.780198 | 58.216121 | 99.079930 | 25.632945 | 27.798811 | 19.583748 | 93.273969 | 89.132596 | 91.486707 | 47279 |
| Carbapenemase-Producing Carbapenem-Resistant Enterobacteriaceae (CP-CRE) | 0.000000 | 33.333333 | 100.000000 | 33.333333 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 3 |
| Carbon Monoxide Poisoning | 0.000000 | 0.480769 | 0.480769 | 0.000000 | 100.000000 | 0.000000 | 4.807692 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 208 |
| Chancroid | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Chlamydia | 0.000000 | 0.080159 | 99.977734 | 97.719935 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 44911 |
| Chlamydia trachomatis | 0.161921 | 1.506565 | 100.000000 | 0.007040 | 100.000000 | 0.007040 | 0.007040 | 0.000000 | 56.960822 | 99.904960 | 99.943680 | 28409 |
| Chlamydia trachomatis infection | 0.023587 | 23.826336 | 35.152439 | 1.152416 | 99.994758 | 0.000000 | 95.937340 | 22.436922 | 99.513649 | 100.000000 | 100.000000 | 267091 |
| Chlamydophila psittaci | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 |
| Cholera | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 87.500000 | 0.000000 | 87.500000 | 37.500000 | 37.500000 | 8 |
| Cholera (toxigenic Vibrio cholerae O1 or O139) | 11.111111 | 44.444444 | 0.000000 | 44.444444 | 100.000000 | 33.333333 | 44.444444 | 33.333333 | 100.000000 | 55.555556 | 55.555556 | 9 |
| Chronic hepatitis B | 0.178253 | 48.128342 | 98.930481 | 0.178253 | 99.821747 | 100.000000 | 1.426025 | 4.812834 | 100.000000 | 98.573975 | 99.108734 | 561 |
| Clostridium botulinum | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 50.000000 | 2 |
| Coccidioides | 0.000000 | 11.616162 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 91.919192 | 61.111111 | 64.646465 | 198 |
| Coccidioidomycosis | 0.143560 | 40.658326 | 80.516817 | 98.779737 | 99.989746 | 0.194832 | 1.020304 | 0.312756 | 94.970263 | 85.141509 | 87.669196 | 19504 |
| Corona virus | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 |
| Coronavirus | 0.000000 | 33.333333 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 66.666667 | 3 |
| Coronavirus Disease 2019 (COVID-19) | 0.053533 | 91.370450 | 55.331906 | 1.691649 | 92.301927 | 6.648822 | 76.177730 | 91.948608 | 51.477516 | 88.083512 | 95.888651 | 9340 |
| Corynebacterium diphtheriae | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Coxiella burnetii | 0.000000 | 5.882353 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 38.235294 | 38.235294 | 34 |
| Cryptosporidiosis | 8.776283 | 40.812329 | 26.694528 | 29.358757 | 99.373123 | 23.769100 | 45.788168 | 19.511558 | 95.886117 | 85.398981 | 89.094946 | 7657 |
| Cryptosporidium | 4.283361 | 17.462932 | 0.000000 | 0.000000 | 66.721582 | 0.000000 | 0.000000 | 0.000000 | 98.270181 | 91.762768 | 92.421746 | 1214 |
| Cyclospora | 0.000000 | 13.058419 | 4.810997 | 0.000000 | 98.281787 | 0.000000 | 2.061856 | 0.000000 | 100.000000 | 96.563574 | 97.938144 | 291 |
| Cyclosporiasis | 11.678543 | 50.554236 | 7.878068 | 27.276326 | 99.722882 | 66.429137 | 30.285036 | 24.703088 | 97.862233 | 93.428345 | 95.328583 | 2526 |
| DENGUE HEM. FEVER | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Diphtheria | 0.000000 | 84.615385 | 46.153846 | 61.538462 | 100.000000 | 0.000000 | 30.769231 | 0.000000 | 92.307692 | 84.615385 | 92.307692 | 13 |
| E COLI SHIGA TOXIN | 0.118835 | 0.415924 | 13.963161 | 0.000000 | 100.000000 | 0.178253 | 1.485443 | 0.000000 | 97.860963 | 70.053476 | 75.341652 | 1683 |
| E. coli Shgt. | 0.150150 | 13.063063 | 8.408408 | 0.000000 | 100.000000 | 0.000000 | 0.450450 | 0.000000 | 99.549550 | 85.885886 | 90.690691 | 666 |
| EHRLICHIA CHAFFEENSIS | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 20.000000 | 100.000000 | 0.000000 | 100.000000 | 40.000000 | 60.000000 | 5 |
| EHRLICHIOSIS/ANAPLASMOSIS UNDETERMINED | 0.609756 | 0.609756 | 65.853659 | 14.634146 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 89.024390 | 88.414634 | 89.634146 | 164 |
| Ehrlichia | 0.000000 | 28.571429 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 71.428571 | 85.714286 | 85.714286 | 7 |
| Ehrlichia chaffeensis | 9.938838 | 46.024465 | 12.691131 | 30.733945 | 99.847095 | 82.568807 | 78.134557 | 66.360856 | 94.648318 | 55.504587 | 59.174312 | 654 |
| Ehrlichia chaffeensis infection | 0.000000 | 57.487923 | 38.164251 | 0.000000 | 92.753623 | 78.260870 | 23.188406 | 71.497585 | 98.067633 | 66.666667 | 71.980676 | 207 |
| Ehrlichia ewingii | 0.000000 | 54.545455 | 0.000000 | 45.454545 | 100.000000 | 90.909091 | 63.636364 | 54.545455 | 90.909091 | 45.454545 | 54.545455 | 11 |
| Ehrlichia ewingii infection | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 66.666667 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 3 |
| Ehrlichioses chaffeensis | 0.000000 | 20.689655 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 3.448276 | 0.000000 | 100.000000 | 44.827586 | 72.413793 | 29 |
| Ehrlichioses ewingii | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 |
| Ehrlichioses/Anaplasmosis undetermined | 0.000000 | 12.500000 | 12.500000 | 0.000000 | 100.000000 | 0.000000 | 6.250000 | 0.000000 | 100.000000 | 56.250000 | 68.750000 | 16 |
| Francisella tularensis | 0.000000 | 29.411765 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 70.588235 | 76.470588 | 17 |
| GIARDIASIS | 0.185357 | 0.926784 | 19.851715 | 6.635774 | 100.000000 | 2.632067 | 25.041705 | 0.000000 | 84.114921 | 88.118628 | 91.232623 | 5395 |
| Giardia | 0.107643 | 21.905274 | 9.472551 | 0.000000 | 100.000000 | 0.000000 | 0.322928 | 0.000000 | 97.954790 | 95.209903 | 96.071044 | 1858 |
| Giardiasis | 12.036218 | 57.260535 | 58.724215 | 52.665260 | 99.121792 | 8.822929 | 39.730411 | 23.616312 | 95.071142 | 95.731500 | 96.793519 | 14689 |
| Gonorrhea | 0.012559 | 21.170476 | 45.231261 | 17.028777 | 99.996412 | 0.000000 | 81.834655 | 19.736984 | 99.808927 | 99.991029 | 99.991927 | 111476 |
| HANTAVIRUS | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 2 |
| HEMOLYTIC UREMIC SYNDROME | 0.000000 | 2.702703 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 67.567568 | 0.000000 | 0.000000 | 37 |
| HEMOLYTIC UREMIC SYNDROME(HUS) | 0.000000 | 0.000000 | 13.333333 | 16.666667 | 100.000000 | 10.000000 | 13.333333 | 0.000000 | 100.000000 | 0.000000 | 16.666667 | 30 |
| HEPATITIS A | 0.000000 | 0.358423 | 12.186380 | 0.000000 | 100.000000 | 0.896057 | 0.896057 | 0.000000 | 97.491039 | 27.598566 | 50.358423 | 558 |
| HEPATITIS C Chronic | 0.117009 | 0.768361 | 99.223839 | 16.057569 | 100.000000 | 0.085807 | 0.085807 | 0.000000 | 95.460041 | 94.371855 | 96.513125 | 25639 |
| HUS | 0.000000 | 61.904762 | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 19.047619 | 21.428571 | 42 |
| Haemophilus influenzae | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 |
| Hansen Disease (Leprosy) | 0.000000 | 0.000000 | 50.000000 | 50.000000 | 100.000000 | 50.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 |
| Hansen disease (Leprosy) | 5.000000 | 40.000000 | 50.000000 | 85.000000 | 100.000000 | 20.000000 | 45.000000 | 20.000000 | 95.000000 | 95.000000 | 97.500000 | 40 |
| Hansens disease | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 40.000000 | 5 |
| Hantavirus | 0.000000 | 56.250000 | 6.250000 | 81.250000 | 100.000000 | 0.000000 | 18.750000 | 18.750000 | 75.000000 | 31.250000 | 37.500000 | 16 |
| Hantavirus infection | 0.000000 | 50.000000 | 50.000000 | 0.000000 | 100.000000 | 50.000000 | 50.000000 | 50.000000 | 100.000000 | 50.000000 | 50.000000 | 2 |
| Hantavirus pulmonary syndrome | 0.000000 | 53.846154 | 0.000000 | 7.692308 | 92.307692 | 15.384615 | 7.692308 | 7.692308 | 100.000000 | 38.461538 | 61.538462 | 13 |
| Hantaviruses | 0.000000 | 33.333333 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 16.666667 | 33.333333 | 6 |
| Hemolytic Uremic Syndrome | 0.000000 | 29.411765 | 14.705882 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 29.411765 | 100.000000 | 11.764706 | 50.000000 | 34 |
| Hemolytic Uremic Syndrome (HUS) | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 8 |
| Hemolytic uremic syndrome postdiarrheal | 3.641457 | 46.778711 | 12.885154 | 76.190476 | 100.000000 | 17.927171 | 18.207283 | 15.966387 | 82.913165 | 20.448179 | 36.694678 | 357 |
| Hepatitis A | 0.266845 | 22.414943 | 16.077385 | 0.000000 | 100.000000 | 0.000000 | 89.059373 | 20.947298 | 98.599066 | 33.689126 | 47.698466 | 1499 |
| Hepatitis B (acute) | 0.324675 | 6.493506 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 88.636364 | 80.519481 | 83.441558 | 308 |
| Hepatitis B (chronic) | 0.047985 | 18.426104 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 95.249520 | 94.097889 | 95.201536 | 2084 |
| Hepatitis B Perinatal Infection | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 87.755102 | 100.000000 | 100.000000 | 49 |
| Hepatitis B acute | 0.000000 | 51.612903 | 32.258065 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 51.612903 | 54.838710 | 31 |
| Hepatitis B chronic | 0.000000 | 60.031348 | 93.260188 | 0.000000 | 100.000000 | 0.000000 | 2.194357 | 0.000000 | 96.238245 | 94.200627 | 95.297806 | 638 |
| Hepatitis C (acute) | 0.000000 | 6.164384 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 97.260274 | 63.013699 | 66.438356 | 146 |
| Hepatitis C (past or present) | 0.098971 | 24.813935 | 0.000000 | 0.003959 | 100.000000 | 0.003959 | 0.003959 | 0.000000 | 96.892320 | 98.745051 | 99.188440 | 25260 |
| Hepatitis C (perinatal) | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 8 |
| Hepatitis C Past or Present Infection | 0.067776 | 0.092421 | 99.624153 | 0.000000 | 100.000000 | 100.000000 | 99.996919 | 0.021565 | 91.543438 | 99.756624 | 99.787431 | 32460 |
| Hepatitis C acute | 0.000000 | 93.750000 | 31.250000 | 0.000000 | 100.000000 | 0.000000 | 12.500000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 16 |
| Hepatitis C past or present | 0.000000 | 95.492085 | 38.300069 | 0.000000 | 100.000000 | 0.000000 | 6.813489 | 0.000000 | 96.111493 | 98.795595 | 99.070888 | 2906 |
| Hepatitis E | 0.000000 | 32.352941 | 58.823529 | 0.000000 | 100.000000 | 0.000000 | 88.235294 | 32.352941 | 100.000000 | 67.647059 | 76.470588 | 34 |
| Histoplasmosis | 0.303030 | 28.181818 | 21.010101 | 6.363636 | 99.292929 | 45.050505 | 44.444444 | 13.838384 | 95.858586 | 57.474747 | 65.151515 | 990 |
| LEGIONELLOSIS | 0.000000 | 0.104312 | 1.703755 | 1.147427 | 100.000000 | 0.208623 | 13.178025 | 0.000000 | 91.307371 | 3.963839 | 25.139082 | 2876 |
| LEPROSY | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 25.000000 | 100.000000 | 0.000000 | 75.000000 | 100.000000 | 100.000000 | 4 |
| LEPTOSPIROSIS | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 33.333333 | 0.000000 | 33.333333 | 3 |
| LISTERIOSIS | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 10.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 10 |
| LYME DISEASE | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 |
| Legionella | 0.000000 | 23.188406 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 14.492754 | 20.289855 | 138 |
| Legionellosis | 9.589041 | 35.314421 | 7.884802 | 28.691619 | 98.220257 | 30.309567 | 49.422932 | 31.194046 | 97.195556 | 7.086614 | 30.428217 | 9271 |
| Legionellosis (Legionnaire Disease) | 0.000000 | 37.068966 | 3.448276 | 67.241379 | 70.689655 | 96.551724 | 99.137931 | 31.896552 | 96.551724 | 2.586207 | 4.310345 | 116 |
| Legionellosis Legionaires disease | 0.000000 | 15.909091 | 5.681818 | 0.000000 | 100.000000 | 0.000000 | 4.545455 | 0.000000 | 100.000000 | 12.500000 | 43.181818 | 88 |
| Legionellosis Pontiac fever | 0.000000 | 33.333333 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 6 |
| Leprosy | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Leptospira | 0.000000 | 16.666667 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 25.000000 | 25.000000 | 12 |
| Leptospirosis | 0.000000 | 48.275862 | 5.172414 | 46.551724 | 98.275862 | 22.413793 | 27.586207 | 13.793103 | 94.827586 | 15.517241 | 27.586207 | 58 |
| Listeria | 0.000000 | 100.000000 | 0.000000 | 8.333333 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 12.500000 | 24 |
| Listeriosis | 23.417722 | 17.088608 | 10.126582 | 3.797468 | 100.000000 | 36.075949 | 41.139241 | 24.683544 | 99.367089 | 26.582278 | 60.126582 | 158 |
| MALARIA | 0.000000 | 11.627907 | 0.000000 | 0.000000 | 100.000000 | 3.875969 | 100.000000 | 0.000000 | 48.062016 | 36.434109 | 51.162791 | 129 |
| Malaria | 16.531165 | 40.379404 | 10.094851 | 40.514905 | 99.932249 | 40.582656 | 46.815718 | 41.802168 | 93.428184 | 44.037940 | 53.387534 | 1476 |
| Mumps | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 1 |
| Neisseria gonorrhoeae | 0.635359 | 3.453039 | 100.000000 | 0.027624 | 100.000000 | 0.027624 | 0.027624 | 0.000000 | 60.386740 | 99.530387 | 99.585635 | 3620 |
| Novel Coronavirus | 0.029860 | 45.207525 | 28.754852 | 12.869513 | 100.000000 | 87.578382 | 44.789489 | 35.682293 | 63.183040 | 74.947746 | 82.979994 | 3349 |
| Novel Coronavirus 2019 | 0.248211 | 100.000000 | 50.040406 | 27.528284 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 52.020319 | 83.999076 | 92.617178 | 17324 |
| Novel Coronavirus COVID-19 | 0.159727 | 22.265999 | 17.655202 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 22.223405 | 75.135768 | 70.077734 | 81.173464 | 9391 |
| PSITTACOSIS | 0.000000 | 41.176471 | 0.000000 | 0.000000 | 100.000000 | 91.176471 | 91.176471 | 0.000000 | 100.000000 | 50.000000 | 70.588235 | 34 |
| Parathypoid | 0.000000 | 44.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 26.000000 | 34.000000 | 50 |
| Paratyphi | 0.000000 | 100.000000 | 25.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 25.000000 | 25.000000 | 4 |
| Paratyphi A | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Paratyphi B | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Paratyphoid Fever | 0.000000 | 41.666667 | 16.666667 | 8.333333 | 100.000000 | 33.333333 | 100.000000 | 41.666667 | 100.000000 | 58.333333 | 58.333333 | 12 |
| Paratyphoid Fever (cause by Salmonella Paratyphi A) | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 33.333333 | 33.333333 | 9 |
| Paratyphoid fever | 50.000000 | 12.500000 | 0.000000 | 25.000000 | 75.000000 | 0.000000 | 75.000000 | 50.000000 | 100.000000 | 25.000000 | 37.500000 | 8 |
| Paratyphoid fever (caused by Salmonella serotypes | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Perinatal Hepatitis B | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 83.333333 | 100.000000 | 100.000000 | 6 |
| Pertussis | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 4 |
| Plague | 0.000000 | 0.000000 | 0.000000 | 50.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 50.000000 | 100.000000 | 2 |
| Plasmodium | 0.000000 | 5.714286 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 97.142857 | 40.000000 | 40.000000 | 35 |
| Polio | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 5 |
| Poliovirus infection nonparalytic | 0.000000 | 64.102564 | 82.051282 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 92.307692 | 100.000000 | 100.000000 | 39 |
| Psittacosis | 0.000000 | 0.000000 | 37.500000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 8 |
| Psittacosis (Ornithosis) | 14.285714 | 57.142857 | 50.000000 | 35.714286 | 100.000000 | 14.285714 | 14.285714 | 14.285714 | 100.000000 | 71.428571 | 71.428571 | 14 |
| Q FEVER ACUTE | 0.000000 | 0.000000 | 40.000000 | 6.666667 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 93.333333 | 46.666667 | 60.000000 | 15 |
| Q FEVER CHRONIC | 0.000000 | 0.000000 | 75.000000 | 25.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 50.000000 | 75.000000 | 4 |
| Q Fever | 0.000000 | 74.626866 | 21.890547 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 94.527363 | 37.810945 | 45.771144 | 201 |
| Q Fever Acute | 0.000000 | 20.000000 | 17.500000 | 0.000000 | 100.000000 | 0.000000 | 42.500000 | 10.000000 | 100.000000 | 17.500000 | 17.500000 | 40 |
| Q Fever Chronic | 0.000000 | 38.461538 | 61.538462 | 0.000000 | 100.000000 | 0.000000 | 76.923077 | 38.461538 | 100.000000 | 30.769231 | 46.153846 | 13 |
| Q fever | 0.000000 | 28.571429 | 28.571429 | 0.000000 | 100.000000 | 0.000000 | 14.285714 | 14.285714 | 100.000000 | 71.428571 | 85.714286 | 7 |
| ROCKY MOUNTAIN SPOTTED FEVER | 0.000000 | 3.703704 | 0.000000 | 0.000000 | 100.000000 | 5.555556 | 100.000000 | 0.000000 | 98.148148 | 68.518519 | 72.222222 | 54 |
| ROCKY MTN SPOTD FE | 0.000000 | 1.416431 | 53.257790 | 15.297450 | 100.000000 | 0.283286 | 0.283286 | 0.000000 | 98.016997 | 81.586402 | 84.702550 | 353 |
| Rickettsia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 81.818182 | 81.818182 | 81.818182 | 11 |
| Rickettsia rickettsii | 0.000000 | 13.333333 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 80.000000 | 80.000000 | 15 |
| Rickettsial Disease - Spotted Fever | 0.000000 | 17.307692 | 25.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 17.307692 | 100.000000 | 67.307692 | 67.307692 | 52 |
| Rickettsial Disease - Spotted Fever (Pre-2020)* | 0.000000 | 7.692308 | 30.769231 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 7.692308 | 100.000000 | 61.538462 | 76.923077 | 13 |
| Rocky Mountain spotted fever | 0.000000 | 25.630252 | 10.924370 | 90.756303 | 100.000000 | 0.000000 | 92.857143 | 0.000000 | 65.336134 | 81.722689 | 85.294118 | 476 |
| SALMONELLOSIS | 0.065952 | 0.280297 | 6.892003 | 2.852432 | 100.000000 | 1.327288 | 51.220115 | 0.000000 | 98.351195 | 58.936521 | 70.634790 | 12130 |
| SALMONELLOSIS - paratyphi | 0.000000 | 4.545455 | 9.090909 | 9.090909 | 100.000000 | 4.545455 | 4.545455 | 0.000000 | 100.000000 | 22.727273 | 45.454545 | 22 |
| SHIGA TOXIN PRODUCING E.COLI (STEC) | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.233100 | 100.000000 | 0.000000 | 67.599068 | 59.207459 | 74.125874 | 429 |
| SHIGELLOSIS | 0.115252 | 0.691510 | 7.376104 | 2.958125 | 100.000000 | 0.806761 | 45.716481 | 0.000000 | 83.058010 | 55.359201 | 68.075298 | 2603 |
| STREP PNEUMO INVASIVE INTERMED | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 |
| STREPTOCOCCAL TOXIC SHOCK SYNDROME | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 51.851852 | 0.000000 | 1.234568 | 81 |
| Salmonella | 0.000000 | 31.818182 | 0.000000 | 0.000000 | 98.731501 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 78.118393 | 78.329810 | 946 |
| Salmonella enterica Typhi infection (S. Typhi infection) | 0.000000 | 22.580645 | 0.000000 | 9.677419 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 22.580645 | 38.709677 | 31 |
| Salmonella enterica serotype Typhi (S.Typhi) infection) | 70.000000 | 35.000000 | 10.000000 | 0.000000 | 100.000000 | 0.000000 | 70.000000 | 70.000000 | 80.000000 | 20.000000 | 55.000000 | 20 |
| Salmonella enterica typhi (S.typhi) infection | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 2 |
| Salmonellosis | 3.190970 | 44.501299 | 20.506030 | 45.622380 | 94.651719 | 19.132961 | 35.864339 | 14.232085 | 89.167159 | 74.089121 | 78.262323 | 38891 |
| Salmonellosis (excl paratyphoid fever and typ | 0.000000 | 88.837209 | 57.209302 | 93.953488 | 99.069767 | 97.209302 | 100.000000 | 22.790698 | 100.000000 | 66.511628 | 66.511628 | 215 |
| Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) | 37.094907 | 27.864583 | 10.792824 | 7.175926 | 100.000000 | 62.239583 | 36.979167 | 36.979167 | 89.699074 | 71.672454 | 76.331019 | 3456 |
| Salmonellosis (excluding S.typhi and paratyphi) | 0.000000 | 0.000000 | 3.947368 | 0.000000 | 84.868421 | 0.000000 | 0.000000 | 0.000000 | 74.342105 | 71.710526 | 82.236842 | 152 |
| Salmonellosis (excluding paratyphoid fever and typhoid fever) | 100.000000 | 22.971888 | 28.433735 | 7.871486 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 74.538153 | 78.072289 | 1245 |
| Salmonellosis (excluding paratyphoid) 2018 only | 0.000000 | 1.694915 | 1.694915 | 0.000000 | 83.050847 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 71.186441 | 77.118644 | 118 |
| Shiga toxin-producing E coli (STEC) | 0.000000 | 50.769231 | 52.307692 | 58.461538 | 92.307692 | 98.461538 | 100.000000 | 53.846154 | 93.846154 | 72.307692 | 76.923077 | 65 |
| Shiga toxin-producing Escherichia coli (STEC) | 5.478332 | 58.427754 | 11.038430 | 76.509754 | 99.217381 | 2.382899 | 14.180586 | 7.569209 | 66.347389 | 75.598645 | 79.149632 | 8561 |
| Shiga toxin-producing Escherichia coli (STEC) | 0.069930 | 35.034965 | 0.000000 | 9.930070 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 97.552448 | 72.867133 | 78.111888 | 1430 |
| Shiga toxin-producing Escherichia coli -(STEC Pre-2019)* | 0.000000 | 20.270270 | 10.810811 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 20.270270 | 100.000000 | 68.918919 | 74.324324 | 74 |
| Shiga toxin-producing Escherichia coli -(STEC) | 0.877193 | 17.543860 | 10.635965 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 17.543860 | 99.232456 | 67.872807 | 71.600877 | 912 |
| Shiga-toxigenic Escherichia coli | 0.924370 | 16.470588 | 0.000000 | 0.000000 | 47.478992 | 0.000000 | 0.000000 | 0.000000 | 96.722689 | 81.596639 | 81.596639 | 1190 |
| Shigella | 3.488372 | 20.413437 | 0.000000 | 0.000000 | 43.410853 | 0.000000 | 0.000000 | 0.000000 | 95.607235 | 80.749354 | 80.878553 | 774 |
| Shigellosis | 5.621742 | 53.432614 | 19.069248 | 53.819806 | 98.577811 | 19.828742 | 34.199553 | 18.555473 | 92.658228 | 73.953835 | 77.155622 | 13430 |
| Spotted Fever Rickettsiosis | 2.330716 | 63.346418 | 43.523062 | 7.777233 | 99.214917 | 44.774289 | 51.913641 | 48.258096 | 97.374877 | 84.641806 | 87.315996 | 4076 |
| Spotted Fever Rickettsiosis (including RMSF) | 0.000000 | 74.914869 | 66.288309 | 0.113507 | 98.070375 | 73.666288 | 31.214529 | 70.601589 | 97.616345 | 91.827469 | 93.643587 | 881 |
| Spotted Fever Rickettsiosis (prev RMSF) | 0.000000 | 66.412214 | 6.870229 | 98.473282 | 100.000000 | 98.473282 | 100.000000 | 67.175573 | 96.946565 | 76.335878 | 78.625954 | 131 |
| Staphylococcus aureus - vancomycin-intermediate | 0.000000 | 0.000000 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 66.666667 | 3 |
| Streptococcal Toxic Shock | 0.000000 | 7.142857 | 7.142857 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 7.142857 | 92.857143 | 7.142857 | 21.428571 | 14 |
| Streptococcal toxic shock syndrome | 7.900677 | 45.146727 | 17.832957 | 31.602709 | 99.548533 | 75.620767 | 30.022573 | 16.478555 | 94.582393 | 16.027088 | 59.819413 | 443 |
| Streptococcal toxic-shock syndrome | 0.000000 | 8.333333 | 16.666667 | 8.333333 | 83.333333 | 8.333333 | 8.333333 | 8.333333 | 75.000000 | 8.333333 | 75.000000 | 12 |
| Syphilis - Congenital | 0.000000 | 85.714286 | 10.714286 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 85.714286 | 100.000000 | 100.000000 | 100.000000 | 28 |
| Syphilis - Early Latent | 0.000000 | 64.538198 | 0.570125 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 64.538198 | 100.000000 | 100.000000 | 100.000000 | 877 |
| Syphilis - Latent of Unknown Duration* | 0.000000 | 33.333333 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 33.333333 | 100.000000 | 100.000000 | 100.000000 | 3 |
| Syphilis - Primary | 0.000000 | 67.573222 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 67.573222 | 100.000000 | 100.000000 | 100.000000 | 478 |
| Syphilis - Secondary | 0.000000 | 70.126582 | 0.253165 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 70.126582 | 100.000000 | 100.000000 | 100.000000 | 790 |
| Syphilis - Unknown Duration or Late | 0.000000 | 72.977778 | 0.355556 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 72.977778 | 100.000000 | 100.000000 | 100.000000 | 1125 |
| TOXIC SHOCK | 0.000000 | 0.000000 | 16.666667 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 16.666667 | 6 |
| TOXIC SHOCK SYNDROME (STREPTOCOCCAL) | 0.000000 | 0.000000 | 16.279070 | 58.139535 | 100.000000 | 32.558140 | 53.488372 | 0.000000 | 100.000000 | 2.325581 | 18.604651 | 43 |
| TULAREMIA | 0.000000 | 0.000000 | 40.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 60.000000 | 80.000000 | 5 |
| TYPHOID | 0.000000 | 0.000000 | 1.562500 | 2.343750 | 100.000000 | 1.562500 | 28.906250 | 0.000000 | 92.968750 | 12.500000 | 26.562500 | 128 |
| Tetanus | 0.000000 | 60.000000 | 30.000000 | 40.000000 | 100.000000 | 0.000000 | 70.000000 | 10.000000 | 100.000000 | 40.000000 | 70.000000 | 10 |
| Toxic Shock | 0.000000 | 28.000000 | 8.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 28.000000 | 96.000000 | 4.000000 | 16.000000 | 25 |
| Toxic-shock syndrome (staphylococcal) | 0.000000 | 78.947368 | 63.157895 | 5.263158 | 100.000000 | 31.578947 | 0.000000 | 0.000000 | 100.000000 | 57.894737 | 63.157895 | 19 |
| Trichinella spiralis | 0.000000 | 60.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 40.000000 | 80.000000 | 5 |
| Trichinellosis | 0.000000 | 100.000000 | 30.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 10 |
| Trichinosis | 0.000000 | 66.666667 | 11.111111 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 88.888889 | 88.888889 | 9 |
| Tularemia | 12.380952 | 42.857143 | 13.333333 | 21.904762 | 96.190476 | 25.714286 | 28.571429 | 25.714286 | 97.142857 | 46.666667 | 50.476190 | 105 |
| Tularemia Glandular | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Tularemia Pneumonic | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 |
| Typhoid Fever | 0.000000 | 25.581395 | 9.302326 | 0.000000 | 100.000000 | 0.000000 | 86.046512 | 16.279070 | 100.000000 | 20.930233 | 27.906977 | 43 |
| Typhoid Fever (Salmonella typhi) | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 4 |
| Typhoid Fever? | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 |
| Typhoid fever | 0.000000 | 11.111111 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 22.222222 | 22.222222 | 9 |
| Typhoid fever (caused by Salmonella typhi) | 8.040201 | 48.994975 | 3.768844 | 63.819095 | 100.000000 | 24.371859 | 24.623116 | 19.346734 | 95.728643 | 27.135678 | 39.698492 | 398 |
| VANCOMYCIN INTERM STAPH AUREAU | 0.000000 | 0.000000 | 50.000000 | 16.666667 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 33.333333 | 62.500000 | 24 |
| VANCOMYCIN RESIST STAPH AUREAU | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 1 |
| VIBRIO | 1.273885 | 0.318471 | 11.783439 | 5.732484 | 100.000000 | 0.318471 | 0.636943 | 0.000000 | 98.089172 | 73.885350 | 81.528662 | 314 |
| VIBRIOS-OTHER | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 4.651163 | 100.000000 | 0.000000 | 79.069767 | 51.162791 | 66.279070 | 86 |
| VISA | 0.000000 | 15.151515 | 63.636364 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 15.151515 | 90.909091 | 33.333333 | 48.484848 | 33 |
| Vancomycin-Resistant Enterococcus | 0.000000 | 0.000000 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 66.666667 | 100.000000 | 3 |
| Vancomycin-intermediate Staphylococcus aureus (VISA) | 10.416667 | 31.250000 | 35.416667 | 25.000000 | 100.000000 | 66.666667 | 35.416667 | 25.000000 | 87.500000 | 43.750000 | 66.666667 | 48 |
| Vancomycin-resistant Staphylococcus aureus (VRSA) | 100.000000 | 100.000000 | 100.000000 | 75.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 4 |
| Varicella (Chickenpox) | 0.000000 | 66.666667 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 66.666667 | 100.000000 | 100.000000 | 3 |
| Vibrio | 0.000000 | 38.461538 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 87.179487 | 89.743590 | 39 |
| Vibriosis | 0.000000 | 48.201439 | 9.352518 | 46.762590 | 63.309353 | 0.000000 | 46.762590 | 0.000000 | 97.482014 | 80.935252 | 82.014388 | 278 |
| Vibriosis (any species of the family Vibrionaceae other than toxigenic Vibrio cholerae O1 or O139) | 61.431871 | 52.655889 | 22.401848 | 7.390300 | 100.000000 | 0.000000 | 61.431871 | 61.431871 | 96.766744 | 81.062356 | 85.219400 | 433 |
| Vibriosis (non-cholera Vibrio species infections) | 0.000000 | 27.067669 | 15.789474 | 71.428571 | 94.736842 | 0.000000 | 79.699248 | 12.030075 | 72.932331 | 63.909774 | 79.699248 | 133 |
| Vibriosis (non-cholera Vibrio species) | 0.000000 | 81.395349 | 65.116279 | 76.744186 | 97.674419 | 100.000000 | 100.000000 | 30.232558 | 97.674419 | 69.767442 | 69.767442 | 43 |
| Vibriosis - Non Cholera | 0.000000 | 18.018018 | 18.018018 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 18.018018 | 99.099099 | 73.873874 | 77.477477 | 111 |
| Vibriosis - Non Cholera (Pre-2019)* | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 33.333333 | 33.333333 | 3 |
# Export table
missing_by_condition.to_csv('./datasets/missing_by_condition.csv')
sns.set(rc={'figure.figsize':(16,48)})
sns.heatmap(missing_by_condition.drop(columns='sample_size'), cbar = False, cmap = "mako").figure.savefig("./figures/missing_by_condition.png")
# Missingness by jurisdiction
missing_by_jurisdiction = pd.concat([dj[y].apply(lambda x: sum(x.isnull()) / len(x) * 100) for y in missing], axis = 1)
missing_by_jurisdiction['sample_size'] = dj.size().values
missing_by_jurisdiction
| Birth_Date | Diag_Dt | Illness_Onset_Dt | Invest_Start_Dt | Illness_End_Dt_str | PHD_Notif_Dt | Earliest_Cnty_Dt | Earliest_State_Dt | mvps_datetime_updated | Hosp_Admit_Dt | Hosp_Dis_Dt | sample_size | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Report_State_txt | ||||||||||||
| Alabama | 0.000000 | 2.928870 | 2.928870 | 0.000000 | 84.518828 | 99.581590 | 86.192469 | 84.518828 | 100.000000 | 70.711297 | 81.589958 | 239 |
| Alaska | 0.000000 | 85.438972 | 18.736617 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 99.892934 | 93.897216 | 96.145610 | 934 |
| Arizona | 0.000000 | 37.500000 | 62.500000 | 25.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 87.500000 | 100.000000 | 8 |
| CT | 0.059589 | 94.637005 | 66.511074 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 94.537690 | 86.374019 | 88.310656 | 10069 |
| California | 0.262038 | 64.131418 | 56.851556 | 100.000000 | 100.000000 | 0.009311 | 0.009311 | 0.009311 | 91.424581 | 83.806864 | 85.986965 | 75180 |
| Colorado | 0.170960 | 99.937833 | 40.828379 | 22.446284 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 65.543770 | 83.129347 | 89.726852 | 25737 |
| Delaware | 0.000000 | 82.686308 | 85.961872 | 86.100520 | 98.249567 | 95.008666 | 99.948007 | 83.778163 | 84.090121 | 90.277296 | 90.849220 | 5770 |
| Florida | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Georgia | 0.817321 | 50.126768 | 37.316520 | 0.000000 | 100.000000 | 51.537897 | 100.000000 | 0.000000 | 80.014011 | 75.984121 | 84.480918 | 29976 |
| Idaho | 0.086308 | 20.689230 | 91.609642 | 0.012330 | 98.125886 | 3.458480 | 8.008138 | 9.204118 | 95.567474 | 99.118427 | 99.482153 | 16221 |
| Illinois | 0.061317 | 31.893063 | 0.000000 | 17.266893 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 95.507501 | 66.962351 | 75.129788 | 24463 |
| Indiana | 0.000000 | 48.915663 | 59.036145 | 0.000000 | 90.843373 | 0.000000 | 66.987952 | 69.638554 | 100.000000 | 78.554217 | 88.915663 | 415 |
| Iowa | 0.014969 | 52.578400 | 44.465235 | 0.000000 | 100.000000 | 0.000000 | 4.475713 | 0.000000 | 92.388294 | 91.310531 | 93.780406 | 13361 |
| Kentucky | 0.291121 | 24.599709 | 35.953421 | 0.000000 | 88.500728 | 0.000000 | 32.751092 | 39.883552 | 89.374090 | 61.280932 | 81.222707 | 687 |
| Louisiana | 0.067674 | 0.092282 | 99.624719 | 0.000000 | 100.000000 | 100.000000 | 99.996924 | 0.021532 | 91.537728 | 99.756990 | 99.787751 | 32509 |
| Maine | 0.035689 | 8.850821 | 8.708066 | 0.000000 | 91.541756 | 0.000000 | 0.000000 | 0.000000 | 47.287652 | 81.299072 | 88.579586 | 2802 |
| Massachusetts | 100.000000 | 53.124794 | 55.518870 | 22.334618 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 55.612265 | 89.050394 | 92.819089 | 76021 |
| Michigan | 0.088108 | 53.327264 | 67.559106 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 53.319628 | 98.448706 | 93.720227 | 94.997797 | 170245 |
| Minnesota | 0.024402 | 98.706686 | 8.735969 | 76.573939 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 73.792094 | 65.300146 | 68.106393 | 4098 |
| Mississippi | 0.156383 | 3.468866 | 71.751493 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 61.373330 | 91.000853 | 94.242252 | 7034 |
| Montana | 0.197628 | 3.754941 | 13.438735 | 0.000000 | 51.976285 | 11.857708 | 1.778656 | 2.173913 | 79.644269 | 87.944664 | 92.490119 | 506 |
| New Jersey | 0.214018 | 53.196897 | 23.649010 | 0.006688 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 93.546014 | 70.358480 | 78.337346 | 14952 |
| New York | 0.110154 | 0.579195 | 54.248912 | 11.571467 | 100.000000 | 0.207871 | 0.399751 | 0.000000 | 97.189304 | 79.282224 | 84.020609 | 56285 |
| North Carolina | 0.008171 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 99.525599 | 100.000000 | 100.000000 | 208052 |
| Oregon | 0.271459 | 13.417045 | 44.588913 | 0.005568 | 94.463624 | 0.005568 | 0.005568 | 0.000000 | 79.046134 | 96.450149 | 96.763371 | 71834 |
| Pennsylvania | 0.000000 | 18.662953 | 20.543175 | 0.139276 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 51.880223 | 70.682451 | 1436 |
| Rhode Island | 0.000000 | 44.444444 | 11.111111 | 0.000000 | 88.888889 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 11.111111 | 11.111111 | 9 |
| South Carolina | 0.000000 | 13.732110 | 84.568807 | 78.524771 | 97.182875 | 0.000000 | 0.000000 | 0.000000 | 95.668502 | 96.455046 | 97.937615 | 81750 |
| Tennessee | 1.714286 | 47.142857 | 47.857143 | 0.000000 | 79.357143 | 0.000000 | 76.000000 | 64.928571 | 82.571429 | 83.571429 | 88.000000 | 1400 |
| Utah | 2.926829 | 61.951220 | 52.195122 | 11.707317 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 89.268293 | 100.000000 | 100.000000 | 205 |
| Virginia | 0.048619 | 85.239207 | 55.834306 | 0.009724 | 92.162583 | 8.031894 | 66.929210 | 88.807857 | 56.787242 | 85.054454 | 93.514197 | 10284 |
| Wisconsin | 0.000000 | 68.686869 | 41.414141 | 0.000000 | 100.000000 | 0.000000 | 16.161616 | 0.000000 | 96.969697 | 90.909091 | 93.939394 | 99 |
# Export table
missing_by_jurisdiction.to_csv('./datasets/missing_by_jurisdiction.csv')
sns.set(rc={'figure.figsize':(16,20)})
sns.heatmap(missing_by_jurisdiction.drop(columns='sample_size'), cbar = False, cmap = "mako").figure.savefig("./figures/missing_by_jurisdiction.png")
missing_by_condition_and_jurisdiction = pd.concat([dx_dj[y].apply(lambda x: sum(x.isnull()) / len(x) * 100) for y in missing], axis = 1)
missing_by_condition_and_jurisdiction['sample_size'] = dx_dj.size().values
missing_by_condition_and_jurisdiction
| Birth_Date | Diag_Dt | Illness_Onset_Dt | Invest_Start_Dt | Illness_End_Dt_str | PHD_Notif_Dt | Earliest_Cnty_Dt | Earliest_State_Dt | mvps_datetime_updated | Hosp_Admit_Dt | Hosp_Dis_Dt | sample_size | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Report_State_txt | Condition_Code_txt | ||||||||||||
| Alabama | Giardiasis | 0.000000 | 3.370787 | 2.808989 | 0.000000 | 85.955056 | 100.000000 | 100.000000 | 83.707865 | 100.000000 | 89.325843 | 94.943820 | 178 |
| Legionellosis | 0.000000 | 1.666667 | 3.333333 | 0.000000 | 81.666667 | 98.333333 | 45.000000 | 86.666667 | 100.000000 | 16.666667 | 43.333333 | 60 | |
| Leptospirosis | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Alaska | Brucellosis | 0.000000 | 100.000000 | 25.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 4 |
| Campylobacteriosis | 0.000000 | 80.991736 | 16.804408 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 93.112948 | 94.765840 | 363 | |
| Coccidioidomycosis | 0.000000 | 75.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 4 | |
| Cryptosporidiosis | 0.000000 | 95.454545 | 15.909091 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 93.181818 | 95.454545 | 44 | |
| Cyclosporiasis | 0.000000 | 100.000000 | 25.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 4 | |
| Diphtheria | 0.000000 | 75.000000 | 25.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 75.000000 | 75.000000 | 100.000000 | 4 | |
| Giardiasis | 0.000000 | 85.321101 | 16.972477 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 98.165138 | 98.623853 | 218 | |
| Hansen disease (Leprosy) | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 3 | |
| Hemolytic uremic syndrome postdiarrheal | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 50.000000 | 100.000000 | 2 | |
| Legionellosis | 0.000000 | 84.615385 | 38.461538 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 61.538462 | 84.615385 | 13 | |
| Malaria | 0.000000 | 64.285714 | 42.857143 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 78.571429 | 100.000000 | 14 | |
| Paratyphoid fever | 0.000000 | 50.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Salmonellosis | 0.000000 | 90.000000 | 22.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 92.666667 | 94.666667 | 150 | |
| Shiga toxin-producing Escherichia coli (STEC) | 0.000000 | 88.095238 | 9.523810 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 97.619048 | 100.000000 | 42 | |
| Shigellosis | 0.000000 | 90.476190 | 23.809524 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 21 | |
| Tetanus | 0.000000 | 100.000000 | 50.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 50.000000 | 100.000000 | 2 | |
| Trichinellosis | 0.000000 | 100.000000 | 30.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 10 | |
| Tularemia | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 3 | |
| Typhoid Fever? | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Typhoid fever (caused by Salmonella typhi) | 0.000000 | 66.666667 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 3 | |
| Vibriosis (non-cholera Vibrio species infections) | 0.000000 | 100.000000 | 11.111111 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 96.296296 | 96.296296 | 27 | |
| Arizona | Coccidioidomycosis | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Corona virus | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Shigellosis | 0.000000 | 60.000000 | 60.000000 | 20.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 80.000000 | 100.000000 | 5 | |
| CT | Anaplasma phagocytophilum | 0.000000 | 99.750623 | 99.750623 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 99.251870 | 99.750623 | 99.750623 | 401 |
| Babesiosis | 0.000000 | 99.651568 | 86.062718 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 66.898955 | 71.777003 | 574 | |
| Campylobacteriosis | 0.000000 | 95.244134 | 21.433101 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 81.991122 | 81.991122 | 82.815472 | 1577 | |
| Chlamydia trachomatis infection | 0.097466 | 99.675114 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 3078 | |
| Cryptosporidiosis | 0.000000 | 100.000000 | 62.721893 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 97.041420 | 85.207101 | 86.390533 | 169 | |
| Cyclosporiasis | 0.000000 | 97.674419 | 3.875969 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 98.449612 | 98.449612 | 98.449612 | 129 | |
| Ehrlichia chaffeensis | 0.000000 | 50.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Giardiasis | 0.000000 | 0.235849 | 88.207547 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 96.462264 | 98.349057 | 98.349057 | 424 | |
| Gonorrhea | 0.197889 | 99.538259 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 99.538259 | 100.000000 | 100.000000 | 1516 | |
| Hansen disease (Leprosy) | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 50.000000 | 100.000000 | 2 | |
| Hemolytic uremic syndrome postdiarrheal | 0.000000 | 50.000000 | 50.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Legionellosis | 0.000000 | 99.696970 | 27.575758 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 97.878788 | 8.787879 | 40.606061 | 330 | |
| Malaria | 0.000000 | 94.117647 | 47.058824 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 88.235294 | 52.941176 | 100.000000 | 17 | |
| Paratyphoid Fever | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Paratyphoid Fever (cause by Salmonella Paratyphi A) | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 33.333333 | 33.333333 | 9 | |
| Salmonellosis | 0.000000 | 99.357798 | 13.211009 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 85.871560 | 69.541284 | 70.642202 | 1090 | |
| Shiga toxin-producing Escherichia coli (STEC) | 0.000000 | 99.270073 | 8.759124 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 88.686131 | 76.277372 | 77.737226 | 274 | |
| Shigellosis | 0.000000 | 99.170124 | 15.352697 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 87.966805 | 65.975104 | 66.390041 | 241 | |
| Spotted Fever Rickettsiosis | 0.000000 | 96.551724 | 24.137931 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 29 | |
| Streptococcal toxic shock syndrome | 0.000000 | 100.000000 | 80.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 96.666667 | 51.666667 | 81.666667 | 60 | |
| Typhoid fever (caused by Salmonella typhi) | 0.000000 | 92.857143 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 85.714286 | 7.142857 | 7.142857 | 14 | |
| Vibriosis | 0.000000 | 100.000000 | 20.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 94.615385 | 80.000000 | 82.307692 | 130 | |
| California | Anaplasma phagocytophilum | 0.000000 | 82.758621 | 13.793103 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 93.103448 | 58.620690 | 62.068966 | 29 |
| Babesiosis | 0.000000 | 72.727273 | 31.818182 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 95.454545 | 68.181818 | 72.727273 | 22 | |
| Brucellosis | 0.000000 | 76.635514 | 12.149533 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 99.065421 | 33.644860 | 45.794393 | 107 | |
| Campylobacteriosis | 0.214252 | 77.997205 | 81.415929 | 100.000000 | 100.000000 | 0.013973 | 0.013973 | 0.013973 | 93.586400 | 100.000000 | 100.000000 | 21470 | |
| Cholera (toxigenic Vibrio cholerae O1 or O139) | 0.000000 | 66.666667 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 3 | |
| Coccidioidomycosis | 0.145417 | 40.836146 | 80.908855 | 100.000000 | 100.000000 | 0.010387 | 0.010387 | 0.010387 | 95.081797 | 85.375227 | 87.878473 | 19255 | |
| Cryptosporidiosis | 0.000000 | 75.432277 | 54.538905 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 93.948127 | 100.000000 | 100.000000 | 1388 | |
| Cyclosporiasis | 7.500000 | 71.785714 | 16.071429 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 84.642857 | 100.000000 | 100.000000 | 280 | |
| Diphtheria | 0.000000 | 100.000000 | 50.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Giardiasis | 0.191939 | 84.420985 | 83.349328 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 93.714012 | 100.000000 | 100.000000 | 6252 | |
| Hansen disease (Leprosy) | 0.000000 | 45.000000 | 45.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 20 | |
| Hantavirus | 0.000000 | 46.153846 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 69.230769 | 30.769231 | 38.461538 | 13 | |
| Hemolytic uremic syndrome postdiarrheal | 0.404858 | 57.489879 | 14.979757 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 76.923077 | 28.340081 | 43.319838 | 247 | |
| Legionellosis | 0.071891 | 74.119339 | 3.522646 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 97.124371 | 6.901510 | 18.691589 | 1391 | |
| Leptospirosis | 0.000000 | 70.370370 | 3.703704 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 92.592593 | 22.222222 | 18.518519 | 27 | |
| Malaria | 0.306748 | 63.803681 | 5.214724 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 96.012270 | 26.687117 | 36.196319 | 326 | |
| Parathypoid | 0.000000 | 44.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 26.000000 | 34.000000 | 50 | |
| Plague | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Psittacosis (Ornithosis) | 0.000000 | 100.000000 | 60.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 80.000000 | 80.000000 | 5 | |
| Q Fever | 0.000000 | 74.626866 | 21.890547 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 94.527363 | 37.810945 | 45.771144 | 201 | |
| Salmonellosis | 0.292765 | 65.462150 | 14.864074 | 100.000000 | 100.000000 | 0.016729 | 0.016729 | 0.016729 | 95.165203 | 69.109159 | 72.906734 | 11955 | |
| Shiga toxin-producing Escherichia coli (STEC) | 0.472973 | 56.689189 | 10.709459 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 57.094595 | 73.665541 | 76.706081 | 5920 | |
| Shigellosis | 0.408233 | 67.528491 | 17.979248 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 94.199694 | 68.072801 | 71.985031 | 5879 | |
| Spotted Fever Rickettsiosis | 0.000000 | 87.179487 | 11.538462 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 48.717949 | 52.564103 | 78 | |
| Trichinosis | 0.000000 | 66.666667 | 11.111111 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 88.888889 | 88.888889 | 9 | |
| Tularemia | 0.000000 | 52.941176 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 94.117647 | 17.647059 | 17.647059 | 17 | |
| Typhoid fever (caused by Salmonella typhi) | 0.000000 | 54.077253 | 2.575107 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 94.849785 | 22.746781 | 32.618026 | 233 | |
| Colorado | Acute Flaccid Myelitis | 0.000000 | 100.000000 | 5.263158 | 26.315789 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 21.052632 | 26.315789 | 19 |
| Brucellosis | 0.000000 | 100.000000 | 20.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 60.000000 | 40.000000 | 60.000000 | 5 | |
| Campylobacteriosis | 0.000000 | 99.963195 | 14.501288 | 6.772175 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 95.546559 | 83.916084 | 85.572322 | 2717 | |
| Cholera (toxigenic Vibrio cholerae O1 or O139) | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Cryptosporidiosis | 0.000000 | 100.000000 | 14.313346 | 5.415861 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 95.164410 | 90.135397 | 90.909091 | 517 | |
| Cyclosporiasis | 0.000000 | 100.000000 | 7.339450 | 4.587156 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 98.165138 | 99.082569 | 109 | |
| Diphtheria | 0.000000 | 100.000000 | 66.666667 | 33.333333 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 83.333333 | 83.333333 | 6 | |
| Giardiasis | 0.000000 | 100.000000 | 81.935484 | 51.705069 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 96.774194 | 98.156682 | 98.801843 | 1085 | |
| Hantavirus pulmonary syndrome | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 71.428571 | 85.714286 | 7 | |
| Hemolytic uremic syndrome postdiarrheal | 0.000000 | 60.869565 | 26.086957 | 47.826087 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 4.347826 | 23 | |
| Legionellosis | 0.000000 | 99.122807 | 10.087719 | 4.385965 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 95.614035 | 9.649123 | 34.210526 | 228 | |
| Listeria | 0.000000 | 100.000000 | 0.000000 | 8.333333 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 12.500000 | 24 | |
| Malaria | 0.000000 | 98.630137 | 4.109589 | 5.479452 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 94.520548 | 41.095890 | 54.794521 | 73 | |
| Novel Coronavirus 2019 | 0.248211 | 100.000000 | 50.040406 | 27.528284 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 52.020319 | 83.999076 | 92.617178 | 17324 | |
| Paratyphi | 0.000000 | 100.000000 | 25.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 25.000000 | 25.000000 | 4 | |
| Psittacosis (Ornithosis) | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Salmonellosis | 0.055960 | 99.888081 | 12.982652 | 5.931729 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 85.058758 | 78.175713 | 81.085618 | 1787 | |
| Shiga toxin-producing Escherichia coli (STEC) | 0.000000 | 100.000000 | 9.693373 | 4.253215 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 95.252226 | 82.492582 | 84.272997 | 1011 | |
| Shigellosis | 0.000000 | 99.826690 | 12.131716 | 5.545927 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 94.800693 | 78.682842 | 78.856153 | 577 | |
| Spotted Fever Rickettsiosis | 0.000000 | 100.000000 | 0.000000 | 11.111111 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 11.111111 | 55.555556 | 55.555556 | 9 | |
| Streptococcal toxic shock syndrome | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Tetanus | 0.000000 | 100.000000 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 66.666667 | 66.666667 | 3 | |
| Toxic-shock syndrome (staphylococcal) | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 11 | |
| Tularemia | 0.000000 | 100.000000 | 20.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 46.666667 | 53.333333 | 15 | |
| Typhoid fever (caused by Salmonella typhi) | 0.000000 | 100.000000 | 25.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 83.333333 | 25.000000 | 25.000000 | 12 | |
| Vibriosis (any species of the family Vibrionaceae other than toxigenic Vibrio cholerae O1 or O139) | 0.000000 | 100.000000 | 8.982036 | 8.383234 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 97.604790 | 83.233533 | 85.029940 | 167 | |
| Delaware | 2019 Novel Coronavirus (nCoV) | 0.000000 | 96.815946 | 99.326948 | 96.815946 | 99.948227 | 100.000000 | 100.000000 | 98.757442 | 77.763396 | 99.456381 | 99.870567 | 3863 |
| Acanthamoeba disease (excluding keratitis) | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 3 | |
| Anaplasma phagocytophilum | 0.000000 | 70.967742 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 77.419355 | 100.000000 | 58.064516 | 58.064516 | 31 | |
| Babesiosis | 0.000000 | 45.454545 | 9.090909 | 100.000000 | 90.909091 | 90.909091 | 100.000000 | 54.545455 | 100.000000 | 9.090909 | 18.181818 | 11 | |
| Brucellosis | 0.000000 | 62.500000 | 12.500000 | 62.500000 | 87.500000 | 87.500000 | 87.500000 | 12.500000 | 100.000000 | 50.000000 | 62.500000 | 8 | |
| Campylobacteriosis | 0.000000 | 35.285054 | 76.733436 | 39.907550 | 94.607088 | 70.570108 | 100.000000 | 52.542373 | 96.764253 | 80.123267 | 80.739599 | 649 | |
| Cryptosporidiosis | 0.000000 | 28.301887 | 76.415094 | 29.245283 | 99.056604 | 61.320755 | 100.000000 | 44.339623 | 88.679245 | 77.358491 | 77.358491 | 106 | |
| Cyclosporiasis | 0.000000 | 8.333333 | 66.666667 | 16.666667 | 83.333333 | 50.000000 | 100.000000 | 41.666667 | 83.333333 | 91.666667 | 91.666667 | 12 | |
| Ehrlichia chaffeensis | 0.000000 | 67.391304 | 5.434783 | 98.913043 | 98.913043 | 100.000000 | 98.913043 | 55.434783 | 92.391304 | 46.739130 | 46.739130 | 92 | |
| Ehrlichia ewingii | 0.000000 | 50.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Giardiasis | 0.000000 | 31.818182 | 72.727273 | 31.818182 | 93.181818 | 65.909091 | 100.000000 | 48.863636 | 97.727273 | 81.818182 | 85.227273 | 88 | |
| Hansen Disease (Leprosy) | 0.000000 | 0.000000 | 50.000000 | 50.000000 | 100.000000 | 50.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Hantavirus pulmonary syndrome | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Legionellosis (Legionnaire Disease) | 0.000000 | 37.068966 | 3.448276 | 67.241379 | 70.689655 | 96.551724 | 99.137931 | 31.896552 | 96.551724 | 2.586207 | 4.310345 | 116 | |
| Malaria | 0.000000 | 51.162791 | 27.906977 | 90.697674 | 100.000000 | 93.023256 | 100.000000 | 44.186047 | 97.674419 | 58.139535 | 58.139535 | 43 | |
| Paratyphoid fever (caused by Salmonella serotypes | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Salmonellosis | 0.000000 | 88.829787 | 98.404255 | 89.893617 | 98.936170 | 100.000000 | 100.000000 | 88.829787 | 100.000000 | 96.276596 | 96.276596 | 188 | |
| Salmonellosis (excl paratyphoid fever and typ | 0.000000 | 88.837209 | 57.209302 | 93.953488 | 99.069767 | 97.209302 | 100.000000 | 22.790698 | 100.000000 | 66.511628 | 66.511628 | 215 | |
| Shiga toxin-producing E coli (STEC) | 0.000000 | 50.769231 | 52.307692 | 58.461538 | 92.307692 | 98.461538 | 100.000000 | 53.846154 | 93.846154 | 72.307692 | 76.923077 | 65 | |
| Shigellosis | 0.000000 | 66.315789 | 65.263158 | 73.684211 | 91.578947 | 100.000000 | 100.000000 | 86.315789 | 98.947368 | 78.947368 | 78.947368 | 95 | |
| Spotted Fever Rickettsiosis (prev RMSF) | 0.000000 | 66.412214 | 6.870229 | 98.473282 | 100.000000 | 98.473282 | 100.000000 | 67.175573 | 96.946565 | 76.335878 | 78.625954 | 131 | |
| Tularemia | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Typhoid Fever (Salmonella typhi) | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 4 | |
| Vibriosis (non-cholera Vibrio species) | 0.000000 | 81.395349 | 65.116279 | 76.744186 | 97.674419 | 100.000000 | 100.000000 | 30.232558 | 97.674419 | 69.767442 | 69.767442 | 43 | |
| Florida | Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Georgia | ACUTE FLACCID MYELITIS | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 60.000000 | 0.000000 | 10.000000 | 10 |
| BOTULISM - INFANT | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 50.000000 | 0.000000 | 100.000000 | 2 | |
| BRUCELLOSIS | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 75.000000 | 25.000000 | 75.000000 | 4 | |
| CAMPYLOBACTERIOSIS | 0.053362 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 3.068303 | 100.000000 | 0.000000 | 64.034152 | 51.921025 | 70.304162 | 3748 | |
| CHOLERA | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| COVID-19 (CORONA VIRUS) | 2.866242 | 100.000000 | 55.944798 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 942 | |
| COVID-19 (CORONAVIRUS) | 1.481429 | 98.321983 | 74.836762 | 0.000000 | 100.000000 | 98.132416 | 100.000000 | 0.000000 | 83.135575 | 98.911746 | 99.571719 | 14243 | |
| CRYPTOSPORIDIOSIS | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 6.113537 | 100.000000 | 0.000000 | 63.537118 | 58.842795 | 74.781659 | 916 | |
| CYCLOSPORIASIS | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.763359 | 100.000000 | 0.000000 | 74.809160 | 68.702290 | 84.732824 | 131 | |
| DENGUE HEM. FEVER | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| EHRLICHIA CHAFFEENSIS | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 20.000000 | 100.000000 | 0.000000 | 100.000000 | 40.000000 | 60.000000 | 5 | |
| GIARDIASIS | 0.300075 | 2.550638 | 0.000000 | 0.000000 | 100.000000 | 10.427607 | 100.000000 | 0.000000 | 40.735184 | 85.971493 | 92.123031 | 1333 | |
| HEMOLYTIC UREMIC SYNDROME | 0.000000 | 2.702703 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 67.567568 | 0.000000 | 0.000000 | 37 | |
| LEGIONELLOSIS | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 39.892183 | 2.695418 | 13.746631 | 371 | |
| LEPROSY | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 25.000000 | 100.000000 | 0.000000 | 75.000000 | 100.000000 | 100.000000 | 4 | |
| LEPTOSPIROSIS | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 33.333333 | 0.000000 | 33.333333 | 3 | |
| LISTERIOSIS | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 10.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 10 | |
| MALARIA | 0.000000 | 11.627907 | 0.000000 | 0.000000 | 100.000000 | 3.875969 | 100.000000 | 0.000000 | 48.062016 | 36.434109 | 51.162791 | 129 | |
| PSITTACOSIS | 0.000000 | 45.161290 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 51.612903 | 74.193548 | 31 | |
| ROCKY MOUNTAIN SPOTTED FEVER | 0.000000 | 3.703704 | 0.000000 | 0.000000 | 100.000000 | 5.555556 | 100.000000 | 0.000000 | 98.148148 | 68.518519 | 72.222222 | 54 | |
| SALMONELLOSIS | 0.016155 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 2.423263 | 100.000000 | 0.000000 | 97.512116 | 50.516963 | 68.287561 | 6190 | |
| SHIGA TOXIN PRODUCING E.COLI (STEC) | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.233100 | 100.000000 | 0.000000 | 67.599068 | 59.207459 | 74.125874 | 429 | |
| SHIGELLOSIS | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 1.697793 | 100.000000 | 0.000000 | 64.855688 | 40.407470 | 62.563667 | 1178 | |
| STREPTOCOCCAL TOXIC SHOCK SYNDROME | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 51.851852 | 0.000000 | 1.234568 | 81 | |
| TYPHOID | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 5.405405 | 100.000000 | 0.000000 | 78.378378 | 16.216216 | 16.216216 | 37 | |
| VIBRIOS-OTHER | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 4.651163 | 100.000000 | 0.000000 | 79.069767 | 51.162791 | 66.279070 | 86 | |
| Idaho | 2019-nCoV | 0.386100 | 81.930502 | 77.683398 | 0.000000 | 90.617761 | 0.000000 | 47.837838 | 48.108108 | 92.471042 | 97.181467 | 98.648649 | 2590 |
| Acute flaccid myelitis | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Anthrax | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 1 | |
| Brucellosis | 0.000000 | 0.000000 | 25.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 25.000000 | 100.000000 | 75.000000 | 75.000000 | 4 | |
| Chlamydia trachomatis infection | 0.009177 | 7.479123 | 95.971368 | 0.000000 | 99.871524 | 0.000000 | 0.422135 | 1.587593 | 95.723594 | 100.000000 | 100.000000 | 10897 | |
| Chronic hepatitis B | 0.178253 | 48.128342 | 98.930481 | 0.178253 | 99.821747 | 100.000000 | 1.426025 | 4.812834 | 100.000000 | 98.573975 | 99.108734 | 561 | |
| Diphtheria | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Giardiasis | 0.000000 | 6.666667 | 22.000000 | 0.000000 | 82.666667 | 0.000000 | 2.000000 | 6.000000 | 100.000000 | 95.333333 | 95.333333 | 150 | |
| Gonorrhea | 0.105263 | 5.526316 | 92.052632 | 0.000000 | 99.789474 | 0.000000 | 0.157895 | 1.631579 | 97.263158 | 99.473684 | 99.526316 | 1900 | |
| Hantavirus pulmonary syndrome | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 75.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 50.000000 | 4 | |
| Legionellosis | 0.000000 | 5.555556 | 5.555556 | 0.000000 | 66.666667 | 0.000000 | 0.000000 | 11.111111 | 94.444444 | 16.666667 | 41.666667 | 36 | |
| Malaria | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Plague | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 1 | |
| Poliovirus infection nonparalytic | 0.000000 | 64.102564 | 82.051282 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 92.307692 | 100.000000 | 100.000000 | 39 | |
| Psittacosis (Ornithosis) | 0.000000 | 66.666667 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 3 | |
| Spotted Fever Rickettsiosis | 0.000000 | 13.043478 | 39.130435 | 0.000000 | 91.304348 | 0.000000 | 0.000000 | 4.347826 | 95.652174 | 86.956522 | 86.956522 | 23 | |
| Streptococcal toxic-shock syndrome | 0.000000 | 16.666667 | 33.333333 | 16.666667 | 83.333333 | 0.000000 | 0.000000 | 16.666667 | 100.000000 | 16.666667 | 83.333333 | 6 | |
| Tularemia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Illinois | AFM | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 |
| Anaplasma phagocytophilum | 0.000000 | 33.333333 | 0.000000 | 13.888889 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 97.222222 | 66.666667 | 72.222222 | 36 | |
| Babesiosis | 0.000000 | 26.666667 | 0.000000 | 13.333333 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 93.333333 | 66.666667 | 73.333333 | 15 | |
| Campylobacteriosis | 0.025707 | 32.660668 | 0.000000 | 20.526992 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 96.850900 | 75.822622 | 81.799486 | 7780 | |
| Cholera (toxigenic Vibrio cholerae O1 or O139) | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Cryptosporidiosis | 0.000000 | 35.588972 | 0.000000 | 17.376775 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 97.326650 | 79.866332 | 86.048454 | 1197 | |
| Cyclosporiasis | 0.150830 | 40.648567 | 0.000000 | 18.174962 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 99.924585 | 92.684766 | 94.193062 | 1326 | |
| Ehrlichia chaffeensis | 0.000000 | 43.076923 | 0.000000 | 36.923077 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 94.615385 | 46.923077 | 53.846154 | 130 | |
| Ehrlichia ewingii | 0.000000 | 50.000000 | 0.000000 | 25.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 25.000000 | 25.000000 | 4 | |
| Hansen disease (Leprosy) | 0.000000 | 50.000000 | 0.000000 | 50.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 2 | |
| Hantavirus pulmonary syndrome | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Hemolytic uremic syndrome postdiarrheal | 0.000000 | 36.842105 | 0.000000 | 15.789474 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 31.578947 | 19 | |
| Histoplasmosis | 0.000000 | 31.614350 | 0.000000 | 14.125561 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 95.291480 | 51.569507 | 60.089686 | 446 | |
| Legionellosis | 0.000000 | 21.649485 | 0.000000 | 9.460279 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 98.362644 | 3.699212 | 35.657975 | 1649 | |
| Leptospirosis | 0.000000 | 16.666667 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 8.333333 | 58.333333 | 12 | |
| Listeriosis | 0.000000 | 21.052632 | 0.000000 | 3.508772 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 98.245614 | 8.771930 | 42.105263 | 57 | |
| Malaria | 0.000000 | 20.304569 | 0.000000 | 14.720812 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 97.461929 | 29.949239 | 47.715736 | 197 | |
| Novel Coronavirus | 0.054083 | 21.579232 | 0.000000 | 23.309897 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 71.768524 | 66.197945 | 75.013521 | 1849 | |
| Psittacosis (Ornithosis) | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 2 | |
| Salmonella enterica Typhi infection (S. Typhi infection) | 0.000000 | 22.580645 | 0.000000 | 9.677419 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 22.580645 | 38.709677 | 31 | |
| Salmonellosis | 0.128205 | 34.923077 | 0.000000 | 17.461538 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 99.846154 | 70.820513 | 75.974359 | 3900 | |
| Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) | 0.139470 | 30.729893 | 0.000000 | 6.508601 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 93.537889 | 68.526267 | 74.291027 | 2151 | |
| Shiga toxin-producing Escherichia coli (STEC) | 0.069930 | 35.034965 | 0.000000 | 9.930070 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 97.552448 | 72.867133 | 78.111888 | 1430 | |
| Shigellosis | 0.074738 | 31.240658 | 0.000000 | 18.609865 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 97.384155 | 71.524664 | 74.588939 | 1338 | |
| Spotted Fever Rickettsiosis | 0.000000 | 41.355140 | 0.000000 | 37.149533 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 98.831776 | 70.560748 | 74.299065 | 428 | |
| Streptococcal toxic shock syndrome | 0.000000 | 33.333333 | 0.000000 | 18.181818 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 96.632997 | 4.040404 | 52.525253 | 297 | |
| Toxic-shock syndrome (staphylococcal) | 0.000000 | 50.000000 | 0.000000 | 16.666667 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 16.666667 | 6 | |
| Tularemia | 0.000000 | 28.571429 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 38.095238 | 47.619048 | 21 | |
| Typhoid fever (caused by Salmonella typhi) | 0.000000 | 25.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 26.923077 | 42.307692 | 52 | |
| Vancomycin-intermediate Staphylococcus aureus (VISA) | 0.000000 | 28.000000 | 0.000000 | 8.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 84.000000 | 36.000000 | 60.000000 | 25 | |
| Indiana | Anaplasma phagocytophilum | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 4 |
| Babesiosis | 0.000000 | 50.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Brucellosis | 0.000000 | 75.000000 | 75.000000 | 0.000000 | 100.000000 | 0.000000 | 50.000000 | 75.000000 | 100.000000 | 100.000000 | 100.000000 | 4 | |
| CP-CRE | 0.000000 | 27.272727 | 63.636364 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 31.818182 | 65.909091 | 44 | |
| Campylobacteriosis | 0.000000 | 33.333333 | 50.000000 | 0.000000 | 80.555556 | 0.000000 | 22.222222 | 30.555556 | 100.000000 | 86.111111 | 97.222222 | 36 | |
| Coccidioidomycosis | 0.000000 | 50.000000 | 50.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 50.000000 | 100.000000 | 2 | |
| Cryptosporidiosis | 0.000000 | 26.666667 | 43.333333 | 0.000000 | 83.333333 | 0.000000 | 33.333333 | 33.333333 | 100.000000 | 86.666667 | 86.666667 | 30 | |
| Cyclosporiasis | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 66.666667 | 0.000000 | 33.333333 | 33.333333 | 100.000000 | 100.000000 | 100.000000 | 3 | |
| Giardiasis | 0.000000 | 29.166667 | 41.666667 | 0.000000 | 79.166667 | 0.000000 | 29.166667 | 20.833333 | 100.000000 | 91.666667 | 91.666667 | 24 | |
| Hantavirus infection | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Legionellosis | 0.000000 | 11.428571 | 25.714286 | 0.000000 | 88.571429 | 0.000000 | 74.285714 | 85.714286 | 100.000000 | 20.000000 | 60.000000 | 35 | |
| Malaria | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 50.000000 | 0.000000 | 50.000000 | 50.000000 | 100.000000 | 0.000000 | 50.000000 | 2 | |
| Shiga toxin-producing Escherichia coli (STEC) | 0.000000 | 40.740741 | 33.333333 | 0.000000 | 77.777778 | 0.000000 | 37.037037 | 22.222222 | 100.000000 | 70.370370 | 81.481481 | 27 | |
| Shigellosis | 0.000000 | 42.857143 | 21.428571 | 0.000000 | 92.857143 | 0.000000 | 35.714286 | 50.000000 | 100.000000 | 85.714286 | 85.714286 | 14 | |
| Spotted Fever Rickettsiosis | 0.000000 | 71.823204 | 76.243094 | 0.000000 | 96.132597 | 0.000000 | 83.977901 | 87.845304 | 100.000000 | 96.132597 | 98.895028 | 181 | |
| Tularemia | 0.000000 | 66.666667 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 33.333333 | 66.666667 | 100.000000 | 100.000000 | 100.000000 | 3 | |
| Vibriosis (non-cholera Vibrio species infections) | 0.000000 | 33.333333 | 66.666667 | 0.000000 | 66.666667 | 0.000000 | 66.666667 | 33.333333 | 100.000000 | 100.000000 | 100.000000 | 3 | |
| Iowa | 2019 Novel Coronavirus | 0.000000 | 35.551664 | 29.597198 | 0.000000 | 100.000000 | 0.000000 | 15.236427 | 0.000000 | 49.970811 | 89.492119 | 94.220665 | 1713 |
| Anaplasmosis phagocytophilum | 0.000000 | 22.727273 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 27.272727 | 0.000000 | 100.000000 | 59.090909 | 68.181818 | 22 | |
| Botulism - Infant | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 25.000000 | 50.000000 | 4 | |
| Brucellosis not temporally/spatially clustered | 0.000000 | 60.000000 | 20.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 60.000000 | 100.000000 | 5 | |
| Campylobacter | 0.000000 | 66.666667 | 77.925270 | 0.000000 | 100.000000 | 0.000000 | 1.302852 | 0.000000 | 99.803343 | 94.616519 | 96.091445 | 4068 | |
| Carbon Monoxide Poisoning | 0.000000 | 0.480769 | 0.480769 | 0.000000 | 100.000000 | 0.000000 | 4.807692 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 208 | |
| Cholera | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Cryptosporidiosis | 0.000000 | 11.145511 | 8.668731 | 0.000000 | 100.000000 | 0.000000 | 0.154799 | 0.000000 | 100.000000 | 90.402477 | 92.414861 | 646 | |
| Cyclospora | 0.000000 | 13.523132 | 4.982206 | 0.000000 | 100.000000 | 0.000000 | 2.135231 | 0.000000 | 100.000000 | 96.441281 | 97.864769 | 281 | |
| E. coli Shgt. | 0.150150 | 13.063063 | 8.408408 | 0.000000 | 100.000000 | 0.000000 | 0.450450 | 0.000000 | 99.549550 | 85.885886 | 90.690691 | 666 | |
| Ehrlichioses chaffeensis | 0.000000 | 20.689655 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 3.448276 | 0.000000 | 100.000000 | 44.827586 | 72.413793 | 29 | |
| Ehrlichioses ewingii | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Ehrlichioses/Anaplasmosis undetermined | 0.000000 | 12.500000 | 12.500000 | 0.000000 | 100.000000 | 0.000000 | 6.250000 | 0.000000 | 100.000000 | 56.250000 | 68.750000 | 16 | |
| Giardia | 0.000000 | 9.494949 | 35.555556 | 0.000000 | 100.000000 | 0.000000 | 1.212121 | 0.000000 | 100.000000 | 89.090909 | 90.909091 | 495 | |
| Hansens disease | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 40.000000 | 5 | |
| Hemolytic Uremic Syndrome (HUS) | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 8 | |
| Hepatitis A | 0.000000 | 16.666667 | 16.666667 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 66.666667 | 83.333333 | 6 | |
| Hepatitis B acute | 0.000000 | 51.612903 | 32.258065 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 51.612903 | 54.838710 | 31 | |
| Hepatitis B chronic | 0.000000 | 60.031348 | 93.260188 | 0.000000 | 100.000000 | 0.000000 | 2.194357 | 0.000000 | 96.238245 | 94.200627 | 95.297806 | 638 | |
| Hepatitis C acute | 0.000000 | 93.750000 | 31.250000 | 0.000000 | 100.000000 | 0.000000 | 12.500000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 16 | |
| Hepatitis C past or present | 0.000000 | 95.492085 | 38.300069 | 0.000000 | 100.000000 | 0.000000 | 6.813489 | 0.000000 | 96.111493 | 98.795595 | 99.070888 | 2906 | |
| Legionellosis Legionaires disease | 0.000000 | 15.909091 | 5.681818 | 0.000000 | 100.000000 | 0.000000 | 4.545455 | 0.000000 | 100.000000 | 12.500000 | 43.181818 | 88 | |
| Legionellosis Pontiac fever | 0.000000 | 33.333333 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 6 | |
| Malaria | 0.000000 | 9.411765 | 2.352941 | 0.000000 | 100.000000 | 0.000000 | 1.176471 | 0.000000 | 100.000000 | 47.058824 | 57.647059 | 85 | |
| Paratyphi A | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Paratyphi B | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Q Fever Acute | 0.000000 | 16.666667 | 8.333333 | 0.000000 | 100.000000 | 0.000000 | 4.166667 | 0.000000 | 100.000000 | 16.666667 | 16.666667 | 24 | |
| Q Fever Chronic | 0.000000 | 0.000000 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 3 | |
| Rocky Mountain spotted fever | 0.000000 | 18.181818 | 4.545455 | 0.000000 | 100.000000 | 0.000000 | 22.727273 | 0.000000 | 100.000000 | 61.363636 | 65.909091 | 44 | |
| Salmonellosis | 0.089686 | 16.412556 | 17.757848 | 0.000000 | 100.000000 | 0.000000 | 1.614350 | 0.000000 | 99.013453 | 82.062780 | 86.008969 | 1115 | |
| Shigellosis | 0.000000 | 12.962963 | 10.185185 | 0.000000 | 100.000000 | 0.000000 | 0.925926 | 0.000000 | 99.537037 | 87.037037 | 89.351852 | 216 | |
| Staphylococcus aureus - vancomycin-intermediate | 0.000000 | 0.000000 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 66.666667 | 3 | |
| Tularemia Glandular | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Tularemia Pneumonic | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Typhoid Fever | 0.000000 | 66.666667 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 33.333333 | 33.333333 | 6 | |
| Kentucky | 2019 Novel Coronavirus (2019-nCoV) | 0.518135 | 34.715026 | 44.559585 | 0.000000 | 89.637306 | 0.000000 | 48.186528 | 44.041451 | 81.865285 | 81.088083 | 94.559585 | 386 |
| Anaplasma phagocytophilum | 0.000000 | 22.222222 | 44.444444 | 0.000000 | 100.000000 | 0.000000 | 22.222222 | 55.555556 | 100.000000 | 88.888889 | 88.888889 | 9 | |
| Histoplasmosis | 0.000000 | 15.909091 | 48.863636 | 0.000000 | 92.045455 | 0.000000 | 3.409091 | 27.272727 | 100.000000 | 50.000000 | 65.909091 | 88 | |
| Legionellosis | 0.000000 | 6.164384 | 10.273973 | 0.000000 | 84.246575 | 0.000000 | 15.068493 | 36.986301 | 97.945205 | 10.958904 | 54.794521 | 146 | |
| Q fever | 0.000000 | 28.571429 | 28.571429 | 0.000000 | 100.000000 | 0.000000 | 14.285714 | 14.285714 | 100.000000 | 71.428571 | 85.714286 | 7 | |
| Tularemia | 0.000000 | 7.692308 | 7.692308 | 0.000000 | 76.923077 | 0.000000 | 15.384615 | 38.461538 | 100.000000 | 76.923077 | 76.923077 | 13 | |
| Vancomycin-Resistant Enterococcus | 0.000000 | 0.000000 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 66.666667 | 100.000000 | 3 | |
| Vibriosis (non-cholera Vibrio species infections) | 0.000000 | 20.000000 | 25.714286 | 0.000000 | 82.857143 | 0.000000 | 25.714286 | 42.857143 | 100.000000 | 65.714286 | 80.000000 | 35 | |
| Louisiana | Hepatitis B Perinatal Infection | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 87.755102 | 100.000000 | 100.000000 | 49 |
| Hepatitis C Past or Present Infection | 0.067776 | 0.092421 | 99.624153 | 0.000000 | 100.000000 | 100.000000 | 99.996919 | 0.021565 | 91.543438 | 99.756624 | 99.787431 | 32460 | |
| Maine | 2019 Novel Coronavirus (2019-nCoV) | 0.383142 | 46.360153 | 53.639847 | 0.000000 | 69.731801 | 0.000000 | 0.000000 | 0.000000 | 64.367816 | 86.206897 | 90.804598 | 261 |
| Anaplasma phagocytophilum | 0.000000 | 0.413223 | 4.132231 | 0.000000 | 99.504132 | 0.000000 | 0.000000 | 0.000000 | 51.570248 | 79.256198 | 88.016529 | 1210 | |
| Babesiosis | 0.000000 | 45.210728 | 7.662835 | 0.000000 | 94.252874 | 0.000000 | 0.000000 | 0.000000 | 55.555556 | 78.160920 | 89.655172 | 261 | |
| Campylobacteriosis | 0.000000 | 0.000000 | 2.832244 | 0.000000 | 81.045752 | 0.000000 | 0.000000 | 0.000000 | 33.769063 | 84.967320 | 88.235294 | 459 | |
| Giardiasis | 0.000000 | 0.598802 | 3.892216 | 0.000000 | 98.203593 | 0.000000 | 0.000000 | 0.000000 | 35.029940 | 91.916168 | 96.107784 | 334 | |
| Salmonella enterica typhi (S.typhi) infection | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 2 | |
| Salmonellosis (excluding S.typhi and paratyphi) | 0.000000 | 0.000000 | 3.947368 | 0.000000 | 84.868421 | 0.000000 | 0.000000 | 0.000000 | 74.342105 | 71.710526 | 82.236842 | 152 | |
| Salmonellosis (excluding paratyphoid) 2018 only | 0.000000 | 1.694915 | 1.694915 | 0.000000 | 83.050847 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 71.186441 | 77.118644 | 118 | |
| Streptococcal toxic-shock syndrome | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 40.000000 | 0.000000 | 80.000000 | 5 | |
| Massachusetts | 2019 Novel Coronavirus (2019-nCoV) | 100.000000 | 64.114524 | 65.197111 | 27.367505 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 42.034636 | 93.158124 | 96.846227 | 57455 |
| Anaplasma phagocytophilum | 100.000000 | 9.601874 | 11.163154 | 1.717408 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 98.829040 | 73.067916 | 75.331772 | 2562 | |
| Babesiosis | 100.000000 | 10.604333 | 17.559863 | 1.311288 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 99.429875 | 69.840365 | 74.572406 | 1754 | |
| Brucellosis | 100.000000 | 66.666667 | 66.666667 | 66.666667 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 33.333333 | 66.666667 | 3 | |
| Campylobacteriosis | 100.000000 | 21.428571 | 28.272981 | 8.635097 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 97.930760 | 83.306805 | 85.575010 | 5026 | |
| Cholera (toxigenic Vibrio cholerae O1 or O139) | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Cryptosporidiosis | 100.000000 | 21.021021 | 32.132132 | 9.459459 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 98.048048 | 85.585586 | 89.639640 | 666 | |
| Cyclosporiasis | 100.000000 | 20.955882 | 9.191176 | 3.308824 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 99.632353 | 95.588235 | 95.955882 | 272 | |
| Ehrlichia chaffeensis | 100.000000 | 10.769231 | 10.769231 | 1.538462 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 78.461538 | 80.000000 | 65 | |
| Giardiasis | 100.000000 | 22.672758 | 43.632210 | 8.909195 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 99.428898 | 95.259852 | 96.344946 | 1751 | |
| Hansen disease (Leprosy) | 100.000000 | 0.000000 | 100.000000 | 50.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Hemolytic uremic syndrome postdiarrheal | 100.000000 | 0.000000 | 0.000000 | 8.333333 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 50.000000 | 12 | |
| Legionellosis | 100.000000 | 20.767494 | 25.056433 | 8.577878 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 98.419865 | 10.722348 | 34.875847 | 886 | |
| Listeriosis | 100.000000 | 21.621622 | 21.621622 | 10.810811 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 10.810811 | 54.054054 | 37 | |
| Malaria | 100.000000 | 23.045267 | 31.275720 | 13.580247 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 99.588477 | 100.000000 | 100.000000 | 243 | |
| Paratyphoid fever | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 25.000000 | 4 | |
| Psittacosis (Ornithosis) | 100.000000 | 0.000000 | 50.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 50.000000 | 50.000000 | 2 | |
| Salmonella enterica serotype Typhi (S.Typhi) infection) | 100.000000 | 21.428571 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 78.571429 | 7.142857 | 50.000000 | 14 | |
| Salmonellosis | 100.000000 | 22.983521 | 27.233304 | 7.111882 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 76.669558 | 79.011275 | 1153 | |
| Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) | 100.000000 | 21.909233 | 27.699531 | 8.215962 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 83.333333 | 76.369327 | 79.264476 | 1278 | |
| Salmonellosis (excluding paratyphoid fever and typhoid fever) | 100.000000 | 22.971888 | 28.433735 | 7.871486 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 74.538153 | 78.072289 | 1245 | |
| Shiga toxin-producing Escherichia coli (STEC) | 100.000000 | 10.958904 | 11.415525 | 5.022831 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 95.205479 | 77.397260 | 83.561644 | 438 | |
| Shigellosis | 100.000000 | 28.429986 | 31.683168 | 9.900990 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 98.585573 | 79.773692 | 81.753890 | 707 | |
| Spotted Fever Rickettsiosis | 100.000000 | 18.888889 | 14.444444 | 1.111111 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 76.666667 | 80.000000 | 90 | |
| Streptococcal toxic shock syndrome | 100.000000 | 20.000000 | 11.428571 | 11.428571 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 60.000000 | 35 | |
| Tularemia | 100.000000 | 30.769231 | 23.076923 | 7.692308 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 23.076923 | 30.769231 | 13 | |
| Typhoid fever (caused by Salmonella typhi) | 100.000000 | 21.875000 | 12.500000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 28.125000 | 59.375000 | 32 | |
| Vancomycin-intermediate Staphylococcus aureus (VISA) | 100.000000 | 100.000000 | 100.000000 | 80.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 80.000000 | 80.000000 | 5 | |
| Vancomycin-resistant Staphylococcus aureus (VRSA) | 100.000000 | 100.000000 | 100.000000 | 75.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 4 | |
| Vibriosis (any species of the family Vibrionaceae other than toxigenic Vibrio cholerae O1 or O139) | 100.000000 | 22.932331 | 30.827068 | 6.766917 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 96.240602 | 79.699248 | 85.338346 | 266 | |
| Michigan | Acute Flaccid Myelitis (AFM) | 0.000000 | 69.230769 | 30.769231 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 69.230769 | 100.000000 | 38.461538 | 61.538462 | 13 |
| Babesiosis | 0.000000 | 31.250000 | 37.500000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 31.250000 | 100.000000 | 75.000000 | 81.250000 | 16 | |
| Botulism - Infant | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 50.000000 | 2 | |
| Botulism - Other | 0.000000 | 66.666667 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 66.666667 | 100.000000 | 33.333333 | 100.000000 | 3 | |
| Brucellosis | 0.000000 | 13.333333 | 40.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 13.333333 | 100.000000 | 100.000000 | 100.000000 | 15 | |
| CP-CRE | 0.000000 | 5.882353 | 5.882353 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 5.882353 | 100.000000 | 100.000000 | 100.000000 | 17 | |
| CP-CRE (Pre-2020)* | 0.602410 | 39.759036 | 5.421687 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 39.759036 | 100.000000 | 100.000000 | 100.000000 | 166 | |
| Campylobacter | 0.173035 | 20.591204 | 19.653929 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 20.591204 | 98.543619 | 75.400144 | 77.692862 | 6935 | |
| Chlamydia trachomatis infection | 0.044838 | 59.540060 | 80.063969 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 59.539064 | 100.000000 | 100.000000 | 100.000000 | 100361 | |
| Cholera | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 85.714286 | 28.571429 | 28.571429 | 7 | |
| Coccidioidomycosis | 0.000000 | 27.717391 | 46.195652 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 27.717391 | 98.369565 | 59.239130 | 64.130435 | 184 | |
| Cryptosporidiosis | 0.059595 | 12.693683 | 16.984505 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 12.693683 | 98.212157 | 78.843862 | 82.598331 | 1678 | |
| Giardiasis | 0.142383 | 21.499763 | 33.744661 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 21.452302 | 98.860940 | 90.697674 | 91.741813 | 2107 | |
| Gonorrhea | 0.017437 | 63.850625 | 83.746004 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 63.850625 | 100.000000 | 100.000000 | 100.000000 | 34410 | |
| Hantavirus | 0.000000 | 100.000000 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 33.333333 | 33.333333 | 3 | |
| Hemolytic Uremic Syndrome | 0.000000 | 29.411765 | 14.705882 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 29.411765 | 100.000000 | 11.764706 | 50.000000 | 34 | |
| Hepatitis A | 0.299625 | 23.670412 | 17.977528 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 23.520599 | 98.801498 | 29.962547 | 45.093633 | 1335 | |
| Hepatitis E | 0.000000 | 36.666667 | 66.666667 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 36.666667 | 100.000000 | 66.666667 | 76.666667 | 30 | |
| Histoplasmosis | 0.686499 | 26.544622 | 35.240275 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 25.858124 | 95.423341 | 64.759725 | 69.107551 | 437 | |
| Legionellosis | 0.053022 | 16.224814 | 9.119830 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 16.224814 | 99.151644 | 3.605514 | 15.853659 | 1886 | |
| Leprosy | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Leptospirosis | 0.000000 | 46.666667 | 13.333333 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 46.666667 | 93.333333 | 6.666667 | 13.333333 | 15 | |
| Listeriosis | 0.000000 | 7.142857 | 7.142857 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 7.142857 | 100.000000 | 100.000000 | 100.000000 | 28 | |
| Novel Coronavirus | 0.000000 | 26.682692 | 11.057692 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 26.682692 | 100.000000 | 74.278846 | 94.230769 | 416 | |
| Novel Coronavirus COVID-19 | 0.159727 | 22.265999 | 17.655202 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 22.223405 | 75.135768 | 70.077734 | 81.173464 | 9391 | |
| Paratyphoid Fever | 0.000000 | 14.285714 | 14.285714 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 14.285714 | 100.000000 | 42.857143 | 42.857143 | 7 | |
| Psittacosis | 0.000000 | 0.000000 | 37.500000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 8 | |
| Q Fever Acute | 0.000000 | 25.000000 | 31.250000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 25.000000 | 100.000000 | 18.750000 | 18.750000 | 16 | |
| Q Fever Chronic | 0.000000 | 50.000000 | 70.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 50.000000 | 100.000000 | 40.000000 | 60.000000 | 10 | |
| Rickettsial Disease - Spotted Fever | 0.000000 | 17.307692 | 25.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 17.307692 | 100.000000 | 67.307692 | 67.307692 | 52 | |
| Rickettsial Disease - Spotted Fever (Pre-2020)* | 0.000000 | 7.692308 | 30.769231 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 7.692308 | 100.000000 | 61.538462 | 76.923077 | 13 | |
| Salmonellosis | 0.778470 | 19.217082 | 14.034698 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 19.172598 | 98.643238 | 65.947509 | 70.974199 | 4496 | |
| Shiga toxin-producing Escherichia coli -(STEC Pre-2019)* | 0.000000 | 20.270270 | 10.810811 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 20.270270 | 100.000000 | 68.918919 | 74.324324 | 74 | |
| Shiga toxin-producing Escherichia coli -(STEC) | 0.877193 | 17.543860 | 10.635965 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 17.543860 | 99.232456 | 67.872807 | 71.600877 | 912 | |
| Shigellosis | 0.979192 | 28.518972 | 14.565483 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 28.518972 | 98.776010 | 72.888617 | 75.091799 | 1634 | |
| Streptococcal Toxic Shock | 0.000000 | 7.142857 | 7.142857 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 7.142857 | 92.857143 | 7.142857 | 21.428571 | 14 | |
| Syphilis - Congenital | 0.000000 | 85.714286 | 10.714286 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 85.714286 | 100.000000 | 100.000000 | 100.000000 | 28 | |
| Syphilis - Early Latent | 0.000000 | 64.538198 | 0.570125 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 64.538198 | 100.000000 | 100.000000 | 100.000000 | 877 | |
| Syphilis - Latent of Unknown Duration* | 0.000000 | 33.333333 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 33.333333 | 100.000000 | 100.000000 | 100.000000 | 3 | |
| Syphilis - Primary | 0.000000 | 67.573222 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 67.573222 | 100.000000 | 100.000000 | 100.000000 | 478 | |
| Syphilis - Secondary | 0.000000 | 70.126582 | 0.253165 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 70.126582 | 100.000000 | 100.000000 | 100.000000 | 790 | |
| Syphilis - Unknown Duration or Late | 0.000000 | 72.977778 | 0.355556 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 72.977778 | 100.000000 | 100.000000 | 100.000000 | 1125 | |
| Tetanus | 0.000000 | 33.333333 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 33.333333 | 100.000000 | 33.333333 | 33.333333 | 3 | |
| Toxic Shock | 0.000000 | 28.000000 | 8.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 28.000000 | 96.000000 | 4.000000 | 16.000000 | 25 | |
| Tularemia | 0.000000 | 50.000000 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 50.000000 | 100.000000 | 83.333333 | 83.333333 | 6 | |
| Typhoid Fever | 0.000000 | 18.918919 | 10.810811 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 18.918919 | 100.000000 | 18.918919 | 27.027027 | 37 | |
| VISA | 0.000000 | 15.151515 | 63.636364 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 15.151515 | 90.909091 | 33.333333 | 48.484848 | 33 | |
| Vibriosis - Non Cholera | 0.000000 | 18.018018 | 18.018018 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 18.018018 | 99.099099 | 73.873874 | 77.477477 | 111 | |
| Vibriosis - Non Cholera (Pre-2019)* | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 33.333333 | 33.333333 | 3 | |
| Minnesota | 2019 Novel Coronavirus (2019-nCoV) | 0.000000 | 99.360341 | 3.198294 | 2.985075 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 82.515991 | 87.846482 | 469 |
| Anaplasma phagocytophilum | 0.000000 | 100.000000 | 3.528173 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 61.611374 | 72.985782 | 73.038441 | 1899 | |
| Babesiosis | 0.000000 | 100.000000 | 13.580247 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 35.802469 | 69.135802 | 69.135802 | 162 | |
| Campylobacteriosis | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Coccidioidomycosis | 0.000000 | 100.000000 | 83.333333 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 6 | |
| Coronavirus Disease 2019 (COVID-19) | 0.000000 | 100.000000 | 24.637681 | 25.442834 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 79.227053 | 76.972625 | 90.016103 | 621 | |
| Cryptosporidiosis | 0.000000 | 100.000000 | 9.090909 | 97.727273 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 97.727273 | 93.181818 | 93.181818 | 44 | |
| Cyclosporiasis | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 88.888889 | 100.000000 | 100.000000 | 18 | |
| Ehrlichia chaffeensis | 0.000000 | 100.000000 | 4.166667 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 70.833333 | 70.833333 | 70.833333 | 24 | |
| Ehrlichia ewingii | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Giardiasis | 0.000000 | 100.000000 | 22.340426 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 93.617021 | 93.617021 | 94 | |
| Hansen disease (Leprosy) | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Hemolytic uremic syndrome postdiarrheal | 0.000000 | 0.000000 | 4.878049 | 4.878049 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 97.560976 | 0.000000 | 2.439024 | 41 | |
| Legionellosis | 0.190114 | 99.429658 | 5.893536 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 97.718631 | 6.273764 | 6.844106 | 526 | |
| Malaria | 0.000000 | 99.200000 | 8.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 47.200000 | 44.800000 | 46.400000 | 125 | |
| Salmonellosis | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Shiga toxin-producing Escherichia coli (STEC) | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Spotted Fever Rickettsiosis | 0.000000 | 100.000000 | 2.631579 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 68.421053 | 68.421053 | 71.052632 | 38 | |
| Streptococcal toxic shock syndrome | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 50.000000 | 100.000000 | 100.000000 | 22 | |
| Vancomycin-intermediate Staphylococcus aureus (VISA) | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 50.000000 | 2 | |
| Mississippi | Anaplasma phagocytophilum | 0.000000 | 25.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 50.000000 | 50.000000 | 4 |
| Brucellosis | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 1 | |
| Campylobacteriosis | 0.366972 | 1.712538 | 87.584098 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 59.938838 | 95.718654 | 97.370031 | 1635 | |
| Cholera (toxigenic Vibrio cholerae O1 or O139) | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Cryptosporidiosis | 0.000000 | 0.367647 | 87.132353 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 61.397059 | 96.323529 | 97.058824 | 272 | |
| Cyclosporiasis | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Ehrlichia chaffeensis | 0.000000 | 11.428571 | 8.571429 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 60.000000 | 54.285714 | 62.857143 | 35 | |
| Ehrlichia ewingii | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 1 | |
| Hansen disease (Leprosy) | 0.000000 | 0.000000 | 40.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 80.000000 | 80.000000 | 5 | |
| Hemolytic uremic syndrome postdiarrheal | 0.000000 | 25.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 25.000000 | 0.000000 | 75.000000 | 4 | |
| Legionellosis | 0.000000 | 2.547771 | 6.369427 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 62.420382 | 7.006369 | 51.592357 | 157 | |
| Malaria | 0.000000 | 18.181818 | 9.090909 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 72.727273 | 27.272727 | 54.545455 | 11 | |
| Rocky Mountain spotted fever | 0.000000 | 26.388889 | 11.574074 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 61.805556 | 83.796296 | 87.268519 | 432 | |
| Salmonellosis | 0.142980 | 1.830140 | 80.011438 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 64.312268 | 95.052902 | 96.368316 | 3497 | |
| Shiga toxin-producing Escherichia coli (STEC) | 0.000000 | 4.471545 | 9.756098 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 48.373984 | 73.983740 | 84.959350 | 246 | |
| Shigellosis | 0.000000 | 1.840491 | 73.159509 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 54.907975 | 96.165644 | 97.852761 | 652 | |
| Tetanus | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 2 | |
| Tularemia | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Typhoid fever (caused by Salmonella typhi) | 0.000000 | 25.000000 | 25.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 75.000000 | 25.000000 | 50.000000 | 4 | |
| Vancomycin-intermediate Staphylococcus aureus (VISA) | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 60.000000 | 100.000000 | 100.000000 | 5 | |
| Vibriosis (non-cholera Vibrio species infections) | 0.000000 | 1.470588 | 10.294118 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 47.058824 | 48.529412 | 72.058824 | 68 | |
| Montana | 2019 Novel Coronavirus (COVID-19) | 0.000000 | 1.445783 | 6.024096 | 0.000000 | 42.650602 | 0.000000 | 1.686747 | 1.927711 | 88.433735 | 87.951807 | 92.530120 | 415 |
| Anaplasmosis | 0.000000 | 0.000000 | 20.000000 | 0.000000 | 100.000000 | 60.000000 | 0.000000 | 0.000000 | 40.000000 | 80.000000 | 80.000000 | 5 | |
| Babesiosis | 0.000000 | 80.000000 | 100.000000 | 0.000000 | 100.000000 | 80.000000 | 20.000000 | 20.000000 | 100.000000 | 100.000000 | 100.000000 | 5 | |
| Coccidioidomycosis | 0.000000 | 6.382979 | 55.319149 | 0.000000 | 95.744681 | 61.702128 | 0.000000 | 0.000000 | 34.042553 | 91.489362 | 93.617021 | 47 | |
| Hantavirus infection | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Leptospirosis | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Malaria | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 50.000000 | 0.000000 | 0.000000 | 50.000000 | 50.000000 | 100.000000 | 2 | |
| Spotted Fever Rickettsiosis | 3.703704 | 22.222222 | 40.740741 | 0.000000 | 88.888889 | 70.370370 | 3.703704 | 7.407407 | 33.333333 | 88.888889 | 96.296296 | 27 | |
| Tularemia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 33.333333 | 66.666667 | 66.666667 | 3 | |
| New Jersey | Anaplasma phagocytophilum | 0.000000 | 36.649215 | 15.445026 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.738220 | 50.785340 | 53.926702 | 382 |
| Babesiosis | 0.000000 | 36.105477 | 14.198783 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.391481 | 48.478702 | 58.620690 | 493 | |
| Brucellosis | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 50.000000 | 2 | |
| Campylobacteriosis | 0.309518 | 50.064483 | 16.301264 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.303585 | 72.375548 | 81.119422 | 3877 | |
| Cholera (toxigenic Vibrio cholerae O1 or O139) | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 2 | |
| Cryptosporidiosis | 0.972763 | 55.058366 | 24.513619 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.610895 | 64.396887 | 77.821012 | 514 | |
| Cyclosporiasis | 0.000000 | 64.939024 | 31.707317 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.695122 | 84.756098 | 92.073171 | 328 | |
| Ehrlichia chaffeensis | 0.000000 | 47.619048 | 20.748299 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 54.081633 | 57.823129 | 294 | |
| Ehrlichia ewingii | 0.000000 | 66.666667 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 33.333333 | 33.333333 | 3 | |
| Giardiasis | 0.207039 | 57.039337 | 28.364389 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.171843 | 83.747412 | 88.302277 | 966 | |
| Hansen disease (Leprosy) | 0.000000 | 75.000000 | 50.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 4 | |
| Hemolytic uremic syndrome postdiarrheal | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 4 | |
| Legionellosis | 0.000000 | 27.478261 | 1.391304 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.652174 | 8.695652 | 44.000000 | 575 | |
| Malaria | 0.000000 | 11.790393 | 0.873362 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.563319 | 23.580786 | 30.567686 | 229 | |
| Novel Coronavirus | 0.000000 | 92.619926 | 84.594096 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 34.409594 | 90.129151 | 92.250923 | 1084 | |
| Paratyphoid Fever | 0.000000 | 75.000000 | 25.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 75.000000 | 75.000000 | 4 | |
| Salmonellosis | 0.059719 | 47.596297 | 22.155867 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 93.938489 | 73.335324 | 80.859958 | 3349 | |
| Shiga toxin-producing Escherichia coli (STEC) | 0.000000 | 41.871921 | 15.270936 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 74.876847 | 81.280788 | 203 | |
| Shigellosis | 0.569106 | 65.691057 | 18.943089 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.674797 | 79.918699 | 85.040650 | 1230 | |
| Spotted Fever Rickettsiosis | 0.298507 | 59.328358 | 20.149254 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.925373 | 74.477612 | 78.880597 | 1340 | |
| Streptococcal toxic shock syndrome | 0.000000 | 37.500000 | 6.250000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 93.750000 | 0.000000 | 43.750000 | 16 | |
| Tularemia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 3 | |
| Typhoid fever (caused by Salmonella typhi) | 0.000000 | 46.666667 | 2.222222 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 53.333333 | 68.888889 | 45 | |
| Vancomycin-intermediate Staphylococcus aureus (VISA) | 0.000000 | 40.000000 | 40.000000 | 20.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 40.000000 | 40.000000 | 5 | |
| New York | BABESIOSIS | 0.000000 | 0.148920 | 31.012658 | 15.487714 | 100.000000 | 0.372301 | 0.595681 | 0.000000 | 98.808637 | 56.850335 | 72.710350 | 2686 |
| BRUCELLOSIS | 0.000000 | 0.000000 | 33.333333 | 8.333333 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 50.000000 | 58.333333 | 12 | |
| CAMPYLOBACTERIOSIS | 0.087346 | 0.294792 | 13.997161 | 10.088438 | 100.000000 | 0.338465 | 0.655093 | 0.000000 | 98.755323 | 76.307457 | 79.572006 | 9159 | |
| CHOLERA | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 2 | |
| CRYPTOSPORIDIOSIS | 0.065147 | 0.651466 | 9.837134 | 6.775244 | 100.000000 | 0.325733 | 0.325733 | 0.000000 | 98.566775 | 76.351792 | 79.478827 | 1535 | |
| E COLI SHIGA TOXIN | 0.118835 | 0.415924 | 13.963161 | 0.000000 | 100.000000 | 0.178253 | 1.485443 | 0.000000 | 97.860963 | 70.053476 | 75.341652 | 1683 | |
| EHRLICHIOSIS/ANAPLASMOSIS UNDETERMINED | 0.609756 | 0.609756 | 65.853659 | 14.634146 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 89.024390 | 88.414634 | 89.634146 | 164 | |
| GIARDIASIS | 0.147710 | 0.393895 | 26.366322 | 8.813392 | 100.000000 | 0.073855 | 0.443131 | 0.000000 | 98.350566 | 88.823240 | 90.940423 | 4062 | |
| HANTAVIRUS | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 2 | |
| HEMOLYTIC UREMIC SYNDROME(HUS) | 0.000000 | 0.000000 | 13.333333 | 16.666667 | 100.000000 | 10.000000 | 13.333333 | 0.000000 | 100.000000 | 0.000000 | 16.666667 | 30 | |
| HEPATITIS A | 0.000000 | 0.358423 | 12.186380 | 0.000000 | 100.000000 | 0.896057 | 0.896057 | 0.000000 | 97.491039 | 27.598566 | 50.358423 | 558 | |
| HEPATITIS C Chronic | 0.117009 | 0.768361 | 99.223839 | 16.057569 | 100.000000 | 0.085807 | 0.085807 | 0.000000 | 95.460041 | 94.371855 | 96.513125 | 25639 | |
| LEGIONELLOSIS | 0.000000 | 0.119760 | 1.956088 | 1.317365 | 100.000000 | 0.239521 | 0.319361 | 0.000000 | 98.922156 | 4.151697 | 26.826347 | 2505 | |
| LYME DISEASE | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| PSITTACOSIS | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 33.333333 | 33.333333 | 3 | |
| Q FEVER ACUTE | 0.000000 | 0.000000 | 40.000000 | 6.666667 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 93.333333 | 46.666667 | 60.000000 | 15 | |
| Q FEVER CHRONIC | 0.000000 | 0.000000 | 75.000000 | 25.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 50.000000 | 75.000000 | 4 | |
| ROCKY MTN SPOTD FE | 0.000000 | 1.416431 | 53.257790 | 15.297450 | 100.000000 | 0.283286 | 0.283286 | 0.000000 | 98.016997 | 81.586402 | 84.702550 | 353 | |
| SALMONELLOSIS | 0.117845 | 0.572391 | 14.074074 | 5.824916 | 100.000000 | 0.185185 | 0.387205 | 0.000000 | 99.225589 | 67.710438 | 73.080808 | 5940 | |
| SALMONELLOSIS - paratyphi | 0.000000 | 4.545455 | 9.090909 | 9.090909 | 100.000000 | 4.545455 | 4.545455 | 0.000000 | 100.000000 | 22.727273 | 45.454545 | 22 | |
| SHIGELLOSIS | 0.210526 | 1.263158 | 13.473684 | 5.403509 | 100.000000 | 0.070175 | 0.842105 | 0.000000 | 98.105263 | 67.719298 | 72.631579 | 1425 | |
| STREP PNEUMO INVASIVE INTERMED | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| TOXIC SHOCK | 0.000000 | 0.000000 | 16.666667 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 16.666667 | 6 | |
| TOXIC SHOCK SYNDROME (STREPTOCOCCAL) | 0.000000 | 0.000000 | 16.279070 | 58.139535 | 100.000000 | 32.558140 | 53.488372 | 0.000000 | 100.000000 | 2.325581 | 18.604651 | 43 | |
| TULAREMIA | 0.000000 | 0.000000 | 40.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 60.000000 | 80.000000 | 5 | |
| TYPHOID | 0.000000 | 0.000000 | 2.197802 | 3.296703 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 98.901099 | 10.989011 | 30.769231 | 91 | |
| VANCOMYCIN INTERM STAPH AUREAU | 0.000000 | 0.000000 | 50.000000 | 16.666667 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 33.333333 | 62.500000 | 24 | |
| VANCOMYCIN RESIST STAPH AUREAU | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 1 | |
| VIBRIO | 1.273885 | 0.318471 | 11.783439 | 5.732484 | 100.000000 | 0.318471 | 0.636943 | 0.000000 | 98.089172 | 73.885350 | 81.528662 | 314 | |
| North Carolina | Chlamydia trachomatis infection | 0.009165 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 99.454682 | 100.000000 | 100.000000 | 152755 |
| Gonorrhea | 0.005425 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 99.721504 | 100.000000 | 100.000000 | 55297 | |
| Oregon | Anaplasma phagocytophilum | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 75.000000 | 75.000000 | 4 |
| Animal Bites | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Babesia | 0.000000 | 10.526316 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 94.736842 | 94.736842 | 94.736842 | 19 | |
| Bacillus anthracis | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Brucella | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 84.615385 | 46.153846 | 69.230769 | 13 | |
| Campylobacter | 0.069622 | 22.603852 | 0.000000 | 0.000000 | 65.630077 | 0.000000 | 0.000000 | 0.000000 | 96.704572 | 87.955442 | 88.001857 | 4309 | |
| Chancroid | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Chlamydia trachomatis | 0.161921 | 1.506565 | 100.000000 | 0.007040 | 100.000000 | 0.007040 | 0.007040 | 0.000000 | 56.960822 | 99.904960 | 99.943680 | 28409 | |
| Chlamydophila psittaci | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Clostridium botulinum | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 50.000000 | 2 | |
| Coccidioides | 0.000000 | 11.616162 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 91.919192 | 61.111111 | 64.646465 | 198 | |
| Coronavirus | 0.000000 | 33.333333 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 66.666667 | 3 | |
| Corynebacterium diphtheriae | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Coxiella burnetii | 0.000000 | 5.882353 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 38.235294 | 38.235294 | 34 | |
| Cryptosporidium | 4.283361 | 17.462932 | 0.000000 | 0.000000 | 66.721582 | 0.000000 | 0.000000 | 0.000000 | 98.270181 | 91.762768 | 92.421746 | 1214 | |
| Cyclospora | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 10 | |
| Ehrlichia | 0.000000 | 28.571429 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 71.428571 | 85.714286 | 85.714286 | 7 | |
| Francisella tularensis | 0.000000 | 29.411765 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 70.588235 | 76.470588 | 17 | |
| Giardia | 0.146735 | 26.412326 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 97.212032 | 97.432135 | 97.945708 | 1363 | |
| HUS | 0.000000 | 61.904762 | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 19.047619 | 21.428571 | 42 | |
| Haemophilus influenzae | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Hantaviruses | 0.000000 | 33.333333 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 16.666667 | 33.333333 | 6 | |
| Hepatitis A | 0.000000 | 12.025316 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 96.835443 | 63.924051 | 68.354430 | 158 | |
| Hepatitis B (acute) | 0.324675 | 6.493506 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 88.636364 | 80.519481 | 83.441558 | 308 | |
| Hepatitis B (chronic) | 0.047985 | 18.426104 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 95.249520 | 94.097889 | 95.201536 | 2084 | |
| Hepatitis C (acute) | 0.000000 | 6.164384 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 97.260274 | 63.013699 | 66.438356 | 146 | |
| Hepatitis C (past or present) | 0.098971 | 24.813935 | 0.000000 | 0.003959 | 100.000000 | 0.003959 | 0.003959 | 0.000000 | 96.892320 | 98.745051 | 99.188440 | 25260 | |
| Hepatitis C (perinatal) | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 8 | |
| Hepatitis E | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 75.000000 | 75.000000 | 4 | |
| Legionella | 0.000000 | 23.188406 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 14.492754 | 20.289855 | 138 | |
| Legionellosis | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 90.526316 | 7.368421 | 17.894737 | 95 | |
| Leptospira | 0.000000 | 16.666667 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 25.000000 | 25.000000 | 12 | |
| Neisseria gonorrhoeae | 0.635359 | 3.453039 | 100.000000 | 0.027624 | 100.000000 | 0.027624 | 0.027624 | 0.000000 | 60.386740 | 99.530387 | 99.585635 | 3620 | |
| Paratyphoid fever | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 2 | |
| Perinatal Hepatitis B | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 83.333333 | 100.000000 | 100.000000 | 6 | |
| Plasmodium | 0.000000 | 5.714286 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 97.142857 | 40.000000 | 40.000000 | 35 | |
| Polio | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 5 | |
| Psittacosis (Ornithosis) | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Rickettsia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 81.818182 | 81.818182 | 81.818182 | 11 | |
| Rickettsia rickettsii | 0.000000 | 13.333333 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 80.000000 | 80.000000 | 15 | |
| Salmonella | 0.000000 | 31.818182 | 0.000000 | 0.000000 | 98.731501 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 78.118393 | 78.329810 | 946 | |
| Salmonellosis | 0.345722 | 4.840104 | 0.000000 | 0.000000 | 24.114088 | 0.000000 | 0.000000 | 0.000000 | 86.689715 | 80.553155 | 80.726016 | 1157 | |
| Shiga-toxigenic Escherichia coli | 0.924370 | 16.470588 | 0.000000 | 0.000000 | 47.478992 | 0.000000 | 0.000000 | 0.000000 | 96.722689 | 81.596639 | 81.596639 | 1190 | |
| Shigella | 3.488372 | 20.413437 | 0.000000 | 0.000000 | 43.410853 | 0.000000 | 0.000000 | 0.000000 | 95.607235 | 80.749354 | 80.878553 | 774 | |
| Trichinella spiralis | 0.000000 | 60.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 40.000000 | 80.000000 | 5 | |
| Typhoid fever | 0.000000 | 11.111111 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 22.222222 | 22.222222 | 9 | |
| Vibrio | 0.000000 | 38.461538 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 87.179487 | 89.743590 | 39 | |
| Vibriosis | 0.000000 | 2.702703 | 0.000000 | 0.000000 | 31.081081 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 81.756757 | 81.756757 | 148 | |
| Pennsylvania | Anaplasma phagocytophilum | 0.000000 | 46.428571 | 48.660714 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 69.196429 | 73.660714 | 224 |
| Babesiosis | 0.000000 | 26.785714 | 26.785714 | 1.785714 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 50.000000 | 75.000000 | 56 | |
| Brucellosis | 0.000000 | 50.000000 | 50.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 50.000000 | 50.000000 | 8 | |
| Coccidioidomycosis | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 50.000000 | 50.000000 | 2 | |
| Ehrlichia chaffeensis | 0.000000 | 58.333333 | 50.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 91.666667 | 91.666667 | 12 | |
| Giardiasis | 0.000000 | 16.086957 | 14.782609 | 0.217391 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 89.782609 | 94.130435 | 460 | |
| Histoplasmosis | 0.000000 | 42.105263 | 57.894737 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 63.157895 | 89.473684 | 19 | |
| Legionellosis | 0.000000 | 1.528384 | 6.550218 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 8.951965 | 47.379913 | 458 | |
| Leptospirosis | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Listeriosis | 0.000000 | 13.888889 | 16.666667 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 13.888889 | 63.888889 | 36 | |
| Malaria | 0.000000 | 9.000000 | 9.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 29.000000 | 48.000000 | 100 | |
| Spotted Fever Rickettsiosis | 0.000000 | 63.265306 | 65.306122 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 85.714286 | 89.795918 | 49 | |
| Streptococcal toxic shock syndrome | 0.000000 | 50.000000 | 25.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 25.000000 | 100.000000 | 4 | |
| Tularemia | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Vancomycin-intermediate Staphylococcus aureus (VISA) | 0.000000 | 0.000000 | 40.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 20.000000 | 80.000000 | 5 | |
| Rhode Island | Coccidioidomycosis | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 |
| Malaria | 0.000000 | 42.857143 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 14.285714 | 14.285714 | 7 | |
| Streptococcal toxic-shock syndrome | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| South Carolina | 2019 Novel Coronavirus (2019-nCoV) | 0.000000 | 82.763654 | 41.539959 | 33.998297 | 94.805985 | 0.000000 | 0.000000 | 0.000000 | 81.559421 | 89.429510 | 97.117139 | 8221 |
| Babesiosis | 0.000000 | 81.250000 | 81.250000 | 6.250000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 93.750000 | 93.750000 | 93.750000 | 16 | |
| Brucellosis | 0.000000 | 40.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 40.000000 | 80.000000 | 5 | |
| Campylobacteriosis | 0.000000 | 34.287454 | 17.356882 | 0.243605 | 81.364190 | 0.000000 | 0.000000 | 0.000000 | 97.442144 | 80.267966 | 85.079172 | 1642 | |
| Chlamydia | 0.000000 | 0.080159 | 99.977734 | 97.719935 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 44911 | |
| Cryptosporidiosis | 0.000000 | 32.697548 | 20.163488 | 0.272480 | 88.555858 | 0.000000 | 0.000000 | 0.000000 | 98.365123 | 83.923706 | 91.553134 | 367 | |
| Cyclosporiasis | 0.000000 | 17.073171 | 7.317073 | 0.000000 | 90.243902 | 0.000000 | 0.000000 | 0.000000 | 97.560976 | 95.121951 | 100.000000 | 41 | |
| Giardiasis | 0.000000 | 41.988950 | 27.071823 | 0.368324 | 88.766114 | 0.000000 | 0.000000 | 0.000000 | 96.685083 | 93.554328 | 96.500921 | 543 | |
| Gonorrhea | 0.000000 | 0.081731 | 99.929167 | 95.172451 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 18353 | |
| Hemolytic uremic syndrome postdiarrheal | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 3 | |
| Legionellosis | 0.000000 | 26.341463 | 4.878049 | 0.487805 | 91.707317 | 0.000000 | 0.000000 | 0.000000 | 80.000000 | 26.829268 | 61.951220 | 205 | |
| Leptospirosis | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 1 | |
| Salmonella enterica serotype Typhi (S.Typhi) infection) | 0.000000 | 66.666667 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 83.333333 | 50.000000 | 66.666667 | 6 | |
| Salmonellosis | 0.000000 | 37.982960 | 18.228651 | 0.217951 | 76.223499 | 0.000000 | 0.000000 | 0.000000 | 69.665148 | 75.926293 | 81.949673 | 5047 | |
| Shiga toxin-producing Escherichia coli (STEC) | 0.000000 | 40.921409 | 15.176152 | 0.271003 | 83.468835 | 0.000000 | 0.000000 | 0.000000 | 69.647696 | 82.655827 | 91.056911 | 369 | |
| Shigellosis | 0.000000 | 44.059406 | 14.851485 | 1.608911 | 77.475248 | 0.000000 | 0.000000 | 0.000000 | 72.772277 | 84.653465 | 87.871287 | 808 | |
| Spotted Fever Rickettsiosis | 0.000000 | 79.399500 | 70.558799 | 0.917431 | 99.916597 | 0.000000 | 0.000000 | 0.000000 | 95.663053 | 97.164304 | 98.165138 | 1199 | |
| Streptococcal toxic shock syndrome | 0.000000 | 33.333333 | 16.666667 | 0.000000 | 66.666667 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 33.333333 | 50.000000 | 6 | |
| Toxic-shock syndrome (staphylococcal) | 0.000000 | 50.000000 | 50.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 2 | |
| Tularemia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Typhoid fever (caused by Salmonella typhi) | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 33.333333 | 3 | |
| Vancomycin-intermediate Staphylococcus aureus (VISA) | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 1 | |
| Tennessee | Anaplasma phagocytophilum | 0.000000 | 42.857143 | 71.428571 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 42.857143 | 85.714286 | 100.000000 | 100.000000 | 7 |
| COVID-19 | 3.598201 | 47.226387 | 33.733133 | 0.000000 | 66.416792 | 0.000000 | 77.661169 | 72.563718 | 65.517241 | 89.655172 | 93.103448 | 667 | |
| Legionellosis | 0.000000 | 10.000000 | 1.428571 | 0.000000 | 67.857143 | 0.000000 | 52.142857 | 60.714286 | 97.857143 | 4.285714 | 27.857143 | 140 | |
| Spotted Fever Rickettsiosis | 0.000000 | 56.068376 | 74.871795 | 0.000000 | 96.752137 | 0.000000 | 79.658120 | 57.606838 | 98.290598 | 95.384615 | 96.410256 | 585 | |
| Tularemia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Utah | 2019 Novel Coronavirus (2019-nCoV) | 1.612903 | 62.096774 | 52.419355 | 15.322581 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 89.516129 | 100.000000 | 100.000000 | 124 |
| Campylobacteriosis | 0.000000 | 12.500000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 8 | |
| Carbapenemase-Producing Carbapenem-Resistant Enterobacteriaceae (CP-CRE) | 0.000000 | 50.000000 | 100.000000 | 50.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Coccidioidomycosis | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Cryptosporidiosis | 0.000000 | 60.000000 | 60.000000 | 20.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 5 | |
| Giardiasis | 0.000000 | 66.666667 | 50.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 83.333333 | 100.000000 | 100.000000 | 6 | |
| Legionellosis | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Mumps | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 1 | |
| Pertussis | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 4 | |
| Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) | 4.347826 | 78.260870 | 73.913043 | 8.695652 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 82.608696 | 100.000000 | 100.000000 | 23 | |
| Shiga toxin-producing Escherichia coli (STEC) | 13.636364 | 72.727273 | 54.545455 | 4.545455 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 90.909091 | 100.000000 | 100.000000 | 22 | |
| Shigellosis | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 3 | |
| Streptococcal toxic shock syndrome | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Varicella (Chickenpox) | 0.000000 | 66.666667 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 66.666667 | 100.000000 | 100.000000 | 3 | |
| Virginia | Anaplasma phagocytophilum infection | 0.000000 | 85.714286 | 71.428571 | 0.000000 | 95.238095 | 52.380952 | 23.809524 | 90.476190 | 95.238095 | 80.952381 | 85.714286 | 21 |
| Coronavirus Disease 2019 (COVID-19) | 0.057346 | 90.755821 | 57.518064 | 0.000000 | 91.753641 | 0.000000 | 74.481018 | 91.375158 | 49.501090 | 88.874871 | 96.306916 | 8719 | |
| Ehrlichia chaffeensis infection | 0.000000 | 57.487923 | 38.164251 | 0.000000 | 92.753623 | 78.260870 | 23.188406 | 71.497585 | 98.067633 | 66.666667 | 71.980676 | 207 | |
| Ehrlichia ewingii infection | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 66.666667 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 3 | |
| Legionellosis | 0.000000 | 11.699779 | 10.816777 | 0.000000 | 88.300221 | 0.220751 | 13.465784 | 82.560706 | 96.688742 | 7.505519 | 50.331126 | 453 | |
| Spotted Fever Rickettsiosis (including RMSF) | 0.000000 | 74.914869 | 66.288309 | 0.113507 | 98.070375 | 73.666288 | 31.214529 | 70.601589 | 97.616345 | 91.827469 | 93.643587 | 881 | |
| Wisconsin | Anaplasma phagocytophilum | 0.000000 | 60.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 20.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 5 |
| Babesiosis | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Campylobacteriosis | 0.000000 | 66.666667 | 46.153846 | 0.000000 | 100.000000 | 0.000000 | 10.256410 | 0.000000 | 100.000000 | 89.743590 | 94.871795 | 39 | |
| Carbapenemase-Producing Carbapenem-Resistant Enterobacteriaceae (CP-CRE) | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Cryptosporidiosis | 0.000000 | 71.428571 | 50.000000 | 0.000000 | 100.000000 | 0.000000 | 14.285714 | 0.000000 | 100.000000 | 85.714286 | 85.714286 | 14 | |
| Cyclosporiasis | 0.000000 | 66.666667 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 66.666667 | 100.000000 | 100.000000 | 3 | |
| Giardiasis | 0.000000 | 77.777778 | 22.222222 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 88.888889 | 88.888889 | 88.888889 | 9 | |
| Legionellosis | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Salmonellosis | 0.000000 | 80.000000 | 20.000000 | 0.000000 | 100.000000 | 0.000000 | 60.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 5 | |
| Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) | 0.000000 | 100.000000 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 3 | |
| Shiga toxin-producing Escherichia coli (STEC) | 0.000000 | 50.000000 | 37.500000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 8 | |
| Shigellosis | 0.000000 | 80.000000 | 70.000000 | 0.000000 | 100.000000 | 0.000000 | 60.000000 | 0.000000 | 90.000000 | 80.000000 | 90.000000 | 10 |
# Export table
missing_by_condition_and_jurisdiction.to_csv('./datasets/missing_by_jurisdiction.csv')
sns.set(rc={'figure.figsize':(16,200)})
sns.heatmap(missing_by_condition_and_jurisdiction.drop(columns='sample_size'), cbar = False, cmap = "mako").figure.savefig("./figures/missing_by_condition_jurisdiction.png")
missing_by_jurisdiction_and_condition = pd.concat([dj_dx[y].apply(lambda x: sum(x.isnull()) / len(x) * 100) for y in missing], axis = 1)
missing_by_jurisdiction_and_condition['sample_size'] = dj_dx.size().values
missing_by_jurisdiction_and_condition
| Birth_Date | Diag_Dt | Illness_Onset_Dt | Invest_Start_Dt | Illness_End_Dt_str | PHD_Notif_Dt | Earliest_Cnty_Dt | Earliest_State_Dt | mvps_datetime_updated | Hosp_Admit_Dt | Hosp_Dis_Dt | sample_size | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Condition_Code_txt | Report_State_txt | ||||||||||||
| 2019 Novel Coronavirus | Iowa | 0.000000 | 35.551664 | 29.597198 | 0.000000 | 100.000000 | 0.000000 | 15.236427 | 0.000000 | 49.970811 | 89.492119 | 94.220665 | 1713 |
| 2019 Novel Coronavirus (2019-nCoV) | Kentucky | 0.518135 | 34.715026 | 44.559585 | 0.000000 | 89.637306 | 0.000000 | 48.186528 | 44.041451 | 81.865285 | 81.088083 | 94.559585 | 386 |
| Maine | 0.383142 | 46.360153 | 53.639847 | 0.000000 | 69.731801 | 0.000000 | 0.000000 | 0.000000 | 64.367816 | 86.206897 | 90.804598 | 261 | |
| Massachusetts | 100.000000 | 64.114524 | 65.197111 | 27.367505 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 42.034636 | 93.158124 | 96.846227 | 57455 | |
| Minnesota | 0.000000 | 99.360341 | 3.198294 | 2.985075 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 82.515991 | 87.846482 | 469 | |
| South Carolina | 0.000000 | 82.763654 | 41.539959 | 33.998297 | 94.805985 | 0.000000 | 0.000000 | 0.000000 | 81.559421 | 89.429510 | 97.117139 | 8221 | |
| Utah | 1.612903 | 62.096774 | 52.419355 | 15.322581 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 89.516129 | 100.000000 | 100.000000 | 124 | |
| 2019 Novel Coronavirus (COVID-19) | Montana | 0.000000 | 1.445783 | 6.024096 | 0.000000 | 42.650602 | 0.000000 | 1.686747 | 1.927711 | 88.433735 | 87.951807 | 92.530120 | 415 |
| 2019 Novel Coronavirus (nCoV) | Delaware | 0.000000 | 96.815946 | 99.326948 | 96.815946 | 99.948227 | 100.000000 | 100.000000 | 98.757442 | 77.763396 | 99.456381 | 99.870567 | 3863 |
| 2019-nCoV | Idaho | 0.386100 | 81.930502 | 77.683398 | 0.000000 | 90.617761 | 0.000000 | 47.837838 | 48.108108 | 92.471042 | 97.181467 | 98.648649 | 2590 |
| ACUTE FLACCID MYELITIS | Georgia | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 60.000000 | 0.000000 | 10.000000 | 10 |
| AFM | Illinois | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 |
| Acanthamoeba disease (excluding keratitis) | Delaware | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 3 |
| Acute Flaccid Myelitis | Colorado | 0.000000 | 100.000000 | 5.263158 | 26.315789 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 21.052632 | 26.315789 | 19 |
| Acute Flaccid Myelitis (AFM) | Michigan | 0.000000 | 69.230769 | 30.769231 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 69.230769 | 100.000000 | 38.461538 | 61.538462 | 13 |
| Acute flaccid myelitis | Idaho | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Anaplasma phagocytophilum | CT | 0.000000 | 99.750623 | 99.750623 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 99.251870 | 99.750623 | 99.750623 | 401 |
| California | 0.000000 | 82.758621 | 13.793103 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 93.103448 | 58.620690 | 62.068966 | 29 | |
| Delaware | 0.000000 | 70.967742 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 77.419355 | 100.000000 | 58.064516 | 58.064516 | 31 | |
| Illinois | 0.000000 | 33.333333 | 0.000000 | 13.888889 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 97.222222 | 66.666667 | 72.222222 | 36 | |
| Indiana | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 4 | |
| Kentucky | 0.000000 | 22.222222 | 44.444444 | 0.000000 | 100.000000 | 0.000000 | 22.222222 | 55.555556 | 100.000000 | 88.888889 | 88.888889 | 9 | |
| Maine | 0.000000 | 0.413223 | 4.132231 | 0.000000 | 99.504132 | 0.000000 | 0.000000 | 0.000000 | 51.570248 | 79.256198 | 88.016529 | 1210 | |
| Massachusetts | 100.000000 | 9.601874 | 11.163154 | 1.717408 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 98.829040 | 73.067916 | 75.331772 | 2562 | |
| Minnesota | 0.000000 | 100.000000 | 3.528173 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 61.611374 | 72.985782 | 73.038441 | 1899 | |
| Mississippi | 0.000000 | 25.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 50.000000 | 50.000000 | 4 | |
| New Jersey | 0.000000 | 36.649215 | 15.445026 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.738220 | 50.785340 | 53.926702 | 382 | |
| Oregon | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 75.000000 | 75.000000 | 4 | |
| Pennsylvania | 0.000000 | 46.428571 | 48.660714 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 69.196429 | 73.660714 | 224 | |
| Tennessee | 0.000000 | 42.857143 | 71.428571 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 42.857143 | 85.714286 | 100.000000 | 100.000000 | 7 | |
| Wisconsin | 0.000000 | 60.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 20.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 5 | |
| Anaplasma phagocytophilum infection | Virginia | 0.000000 | 85.714286 | 71.428571 | 0.000000 | 95.238095 | 52.380952 | 23.809524 | 90.476190 | 95.238095 | 80.952381 | 85.714286 | 21 |
| Anaplasmosis | Montana | 0.000000 | 0.000000 | 20.000000 | 0.000000 | 100.000000 | 60.000000 | 0.000000 | 0.000000 | 40.000000 | 80.000000 | 80.000000 | 5 |
| Anaplasmosis phagocytophilum | Iowa | 0.000000 | 22.727273 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 27.272727 | 0.000000 | 100.000000 | 59.090909 | 68.181818 | 22 |
| Animal Bites | Oregon | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Anthrax | Idaho | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 1 |
| BABESIOSIS | New York | 0.000000 | 0.148920 | 31.012658 | 15.487714 | 100.000000 | 0.372301 | 0.595681 | 0.000000 | 98.808637 | 56.850335 | 72.710350 | 2686 |
| BOTULISM - INFANT | Georgia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 50.000000 | 0.000000 | 100.000000 | 2 |
| BRUCELLOSIS | Georgia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 75.000000 | 25.000000 | 75.000000 | 4 |
| New York | 0.000000 | 0.000000 | 33.333333 | 8.333333 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 50.000000 | 58.333333 | 12 | |
| Babesia | Oregon | 0.000000 | 10.526316 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 94.736842 | 94.736842 | 94.736842 | 19 |
| Babesiosis | CT | 0.000000 | 99.651568 | 86.062718 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 66.898955 | 71.777003 | 574 |
| California | 0.000000 | 72.727273 | 31.818182 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 95.454545 | 68.181818 | 72.727273 | 22 | |
| Delaware | 0.000000 | 45.454545 | 9.090909 | 100.000000 | 90.909091 | 90.909091 | 100.000000 | 54.545455 | 100.000000 | 9.090909 | 18.181818 | 11 | |
| Illinois | 0.000000 | 26.666667 | 0.000000 | 13.333333 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 93.333333 | 66.666667 | 73.333333 | 15 | |
| Indiana | 0.000000 | 50.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Maine | 0.000000 | 45.210728 | 7.662835 | 0.000000 | 94.252874 | 0.000000 | 0.000000 | 0.000000 | 55.555556 | 78.160920 | 89.655172 | 261 | |
| Massachusetts | 100.000000 | 10.604333 | 17.559863 | 1.311288 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 99.429875 | 69.840365 | 74.572406 | 1754 | |
| Michigan | 0.000000 | 31.250000 | 37.500000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 31.250000 | 100.000000 | 75.000000 | 81.250000 | 16 | |
| Minnesota | 0.000000 | 100.000000 | 13.580247 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 35.802469 | 69.135802 | 69.135802 | 162 | |
| Montana | 0.000000 | 80.000000 | 100.000000 | 0.000000 | 100.000000 | 80.000000 | 20.000000 | 20.000000 | 100.000000 | 100.000000 | 100.000000 | 5 | |
| New Jersey | 0.000000 | 36.105477 | 14.198783 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.391481 | 48.478702 | 58.620690 | 493 | |
| Pennsylvania | 0.000000 | 26.785714 | 26.785714 | 1.785714 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 50.000000 | 75.000000 | 56 | |
| South Carolina | 0.000000 | 81.250000 | 81.250000 | 6.250000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 93.750000 | 93.750000 | 93.750000 | 16 | |
| Wisconsin | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Bacillus anthracis | Oregon | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 |
| Botulism - Infant | Iowa | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 25.000000 | 50.000000 | 4 |
| Michigan | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 50.000000 | 2 | |
| Botulism - Other | Michigan | 0.000000 | 66.666667 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 66.666667 | 100.000000 | 33.333333 | 100.000000 | 3 |
| Brucella | Oregon | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 84.615385 | 46.153846 | 69.230769 | 13 |
| Brucellosis | Alaska | 0.000000 | 100.000000 | 25.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 4 |
| California | 0.000000 | 76.635514 | 12.149533 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 99.065421 | 33.644860 | 45.794393 | 107 | |
| Colorado | 0.000000 | 100.000000 | 20.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 60.000000 | 40.000000 | 60.000000 | 5 | |
| Delaware | 0.000000 | 62.500000 | 12.500000 | 62.500000 | 87.500000 | 87.500000 | 87.500000 | 12.500000 | 100.000000 | 50.000000 | 62.500000 | 8 | |
| Idaho | 0.000000 | 0.000000 | 25.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 25.000000 | 100.000000 | 75.000000 | 75.000000 | 4 | |
| Indiana | 0.000000 | 75.000000 | 75.000000 | 0.000000 | 100.000000 | 0.000000 | 50.000000 | 75.000000 | 100.000000 | 100.000000 | 100.000000 | 4 | |
| Massachusetts | 100.000000 | 66.666667 | 66.666667 | 66.666667 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 33.333333 | 66.666667 | 3 | |
| Michigan | 0.000000 | 13.333333 | 40.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 13.333333 | 100.000000 | 100.000000 | 100.000000 | 15 | |
| Mississippi | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 1 | |
| New Jersey | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 50.000000 | 2 | |
| Pennsylvania | 0.000000 | 50.000000 | 50.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 50.000000 | 50.000000 | 8 | |
| South Carolina | 0.000000 | 40.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 40.000000 | 80.000000 | 5 | |
| Brucellosis not temporally/spatially clustered | Iowa | 0.000000 | 60.000000 | 20.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 60.000000 | 100.000000 | 5 |
| CAMPYLOBACTERIOSIS | Georgia | 0.053362 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 3.068303 | 100.000000 | 0.000000 | 64.034152 | 51.921025 | 70.304162 | 3748 |
| New York | 0.087346 | 0.294792 | 13.997161 | 10.088438 | 100.000000 | 0.338465 | 0.655093 | 0.000000 | 98.755323 | 76.307457 | 79.572006 | 9159 | |
| CHOLERA | Georgia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| New York | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 2 | |
| COVID-19 | Tennessee | 3.598201 | 47.226387 | 33.733133 | 0.000000 | 66.416792 | 0.000000 | 77.661169 | 72.563718 | 65.517241 | 89.655172 | 93.103448 | 667 |
| COVID-19 (CORONA VIRUS) | Georgia | 2.866242 | 100.000000 | 55.944798 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 942 |
| COVID-19 (CORONAVIRUS) | Georgia | 1.481429 | 98.321983 | 74.836762 | 0.000000 | 100.000000 | 98.132416 | 100.000000 | 0.000000 | 83.135575 | 98.911746 | 99.571719 | 14243 |
| CP-CRE | Indiana | 0.000000 | 27.272727 | 63.636364 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 31.818182 | 65.909091 | 44 |
| Michigan | 0.000000 | 5.882353 | 5.882353 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 5.882353 | 100.000000 | 100.000000 | 100.000000 | 17 | |
| CP-CRE (Pre-2020)* | Michigan | 0.602410 | 39.759036 | 5.421687 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 39.759036 | 100.000000 | 100.000000 | 100.000000 | 166 |
| CRYPTOSPORIDIOSIS | Georgia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 6.113537 | 100.000000 | 0.000000 | 63.537118 | 58.842795 | 74.781659 | 916 |
| New York | 0.065147 | 0.651466 | 9.837134 | 6.775244 | 100.000000 | 0.325733 | 0.325733 | 0.000000 | 98.566775 | 76.351792 | 79.478827 | 1535 | |
| CYCLOSPORIASIS | Georgia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.763359 | 100.000000 | 0.000000 | 74.809160 | 68.702290 | 84.732824 | 131 |
| Campylobacter | Iowa | 0.000000 | 66.666667 | 77.925270 | 0.000000 | 100.000000 | 0.000000 | 1.302852 | 0.000000 | 99.803343 | 94.616519 | 96.091445 | 4068 |
| Michigan | 0.173035 | 20.591204 | 19.653929 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 20.591204 | 98.543619 | 75.400144 | 77.692862 | 6935 | |
| Oregon | 0.069622 | 22.603852 | 0.000000 | 0.000000 | 65.630077 | 0.000000 | 0.000000 | 0.000000 | 96.704572 | 87.955442 | 88.001857 | 4309 | |
| Campylobacteriosis | Alaska | 0.000000 | 80.991736 | 16.804408 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 93.112948 | 94.765840 | 363 |
| CT | 0.000000 | 95.244134 | 21.433101 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 81.991122 | 81.991122 | 82.815472 | 1577 | |
| California | 0.214252 | 77.997205 | 81.415929 | 100.000000 | 100.000000 | 0.013973 | 0.013973 | 0.013973 | 93.586400 | 100.000000 | 100.000000 | 21470 | |
| Colorado | 0.000000 | 99.963195 | 14.501288 | 6.772175 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 95.546559 | 83.916084 | 85.572322 | 2717 | |
| Delaware | 0.000000 | 35.285054 | 76.733436 | 39.907550 | 94.607088 | 70.570108 | 100.000000 | 52.542373 | 96.764253 | 80.123267 | 80.739599 | 649 | |
| Illinois | 0.025707 | 32.660668 | 0.000000 | 20.526992 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 96.850900 | 75.822622 | 81.799486 | 7780 | |
| Indiana | 0.000000 | 33.333333 | 50.000000 | 0.000000 | 80.555556 | 0.000000 | 22.222222 | 30.555556 | 100.000000 | 86.111111 | 97.222222 | 36 | |
| Maine | 0.000000 | 0.000000 | 2.832244 | 0.000000 | 81.045752 | 0.000000 | 0.000000 | 0.000000 | 33.769063 | 84.967320 | 88.235294 | 459 | |
| Massachusetts | 100.000000 | 21.428571 | 28.272981 | 8.635097 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 97.930760 | 83.306805 | 85.575010 | 5026 | |
| Minnesota | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Mississippi | 0.366972 | 1.712538 | 87.584098 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 59.938838 | 95.718654 | 97.370031 | 1635 | |
| New Jersey | 0.309518 | 50.064483 | 16.301264 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.303585 | 72.375548 | 81.119422 | 3877 | |
| South Carolina | 0.000000 | 34.287454 | 17.356882 | 0.243605 | 81.364190 | 0.000000 | 0.000000 | 0.000000 | 97.442144 | 80.267966 | 85.079172 | 1642 | |
| Utah | 0.000000 | 12.500000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 8 | |
| Wisconsin | 0.000000 | 66.666667 | 46.153846 | 0.000000 | 100.000000 | 0.000000 | 10.256410 | 0.000000 | 100.000000 | 89.743590 | 94.871795 | 39 | |
| Carbapenemase-Producing Carbapenem-Resistant Enterobacteriaceae (CP-CRE) | Utah | 0.000000 | 50.000000 | 100.000000 | 50.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 |
| Wisconsin | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Carbon Monoxide Poisoning | Iowa | 0.000000 | 0.480769 | 0.480769 | 0.000000 | 100.000000 | 0.000000 | 4.807692 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 208 |
| Chancroid | Oregon | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Chlamydia | South Carolina | 0.000000 | 0.080159 | 99.977734 | 97.719935 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 44911 |
| Chlamydia trachomatis | Oregon | 0.161921 | 1.506565 | 100.000000 | 0.007040 | 100.000000 | 0.007040 | 0.007040 | 0.000000 | 56.960822 | 99.904960 | 99.943680 | 28409 |
| Chlamydia trachomatis infection | CT | 0.097466 | 99.675114 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 3078 |
| Idaho | 0.009177 | 7.479123 | 95.971368 | 0.000000 | 99.871524 | 0.000000 | 0.422135 | 1.587593 | 95.723594 | 100.000000 | 100.000000 | 10897 | |
| Michigan | 0.044838 | 59.540060 | 80.063969 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 59.539064 | 100.000000 | 100.000000 | 100.000000 | 100361 | |
| North Carolina | 0.009165 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 99.454682 | 100.000000 | 100.000000 | 152755 | |
| Chlamydophila psittaci | Oregon | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 |
| Cholera | Iowa | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Michigan | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 85.714286 | 28.571429 | 28.571429 | 7 | |
| Cholera (toxigenic Vibrio cholerae O1 or O139) | California | 0.000000 | 66.666667 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 3 |
| Colorado | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Illinois | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Massachusetts | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Mississippi | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| New Jersey | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 2 | |
| Chronic hepatitis B | Idaho | 0.178253 | 48.128342 | 98.930481 | 0.178253 | 99.821747 | 100.000000 | 1.426025 | 4.812834 | 100.000000 | 98.573975 | 99.108734 | 561 |
| Clostridium botulinum | Oregon | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 50.000000 | 2 |
| Coccidioides | Oregon | 0.000000 | 11.616162 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 91.919192 | 61.111111 | 64.646465 | 198 |
| Coccidioidomycosis | Alaska | 0.000000 | 75.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 4 |
| Arizona | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| California | 0.145417 | 40.836146 | 80.908855 | 100.000000 | 100.000000 | 0.010387 | 0.010387 | 0.010387 | 95.081797 | 85.375227 | 87.878473 | 19255 | |
| Indiana | 0.000000 | 50.000000 | 50.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 50.000000 | 100.000000 | 2 | |
| Michigan | 0.000000 | 27.717391 | 46.195652 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 27.717391 | 98.369565 | 59.239130 | 64.130435 | 184 | |
| Minnesota | 0.000000 | 100.000000 | 83.333333 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 6 | |
| Montana | 0.000000 | 6.382979 | 55.319149 | 0.000000 | 95.744681 | 61.702128 | 0.000000 | 0.000000 | 34.042553 | 91.489362 | 93.617021 | 47 | |
| Pennsylvania | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 50.000000 | 50.000000 | 2 | |
| Rhode Island | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Utah | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Corona virus | Arizona | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 |
| Coronavirus | Oregon | 0.000000 | 33.333333 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 66.666667 | 3 |
| Coronavirus Disease 2019 (COVID-19) | Minnesota | 0.000000 | 100.000000 | 24.637681 | 25.442834 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 79.227053 | 76.972625 | 90.016103 | 621 |
| Virginia | 0.057346 | 90.755821 | 57.518064 | 0.000000 | 91.753641 | 0.000000 | 74.481018 | 91.375158 | 49.501090 | 88.874871 | 96.306916 | 8719 | |
| Corynebacterium diphtheriae | Oregon | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Coxiella burnetii | Oregon | 0.000000 | 5.882353 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 38.235294 | 38.235294 | 34 |
| Cryptosporidiosis | Alaska | 0.000000 | 95.454545 | 15.909091 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 93.181818 | 95.454545 | 44 |
| CT | 0.000000 | 100.000000 | 62.721893 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 97.041420 | 85.207101 | 86.390533 | 169 | |
| California | 0.000000 | 75.432277 | 54.538905 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 93.948127 | 100.000000 | 100.000000 | 1388 | |
| Colorado | 0.000000 | 100.000000 | 14.313346 | 5.415861 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 95.164410 | 90.135397 | 90.909091 | 517 | |
| Delaware | 0.000000 | 28.301887 | 76.415094 | 29.245283 | 99.056604 | 61.320755 | 100.000000 | 44.339623 | 88.679245 | 77.358491 | 77.358491 | 106 | |
| Illinois | 0.000000 | 35.588972 | 0.000000 | 17.376775 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 97.326650 | 79.866332 | 86.048454 | 1197 | |
| Indiana | 0.000000 | 26.666667 | 43.333333 | 0.000000 | 83.333333 | 0.000000 | 33.333333 | 33.333333 | 100.000000 | 86.666667 | 86.666667 | 30 | |
| Iowa | 0.000000 | 11.145511 | 8.668731 | 0.000000 | 100.000000 | 0.000000 | 0.154799 | 0.000000 | 100.000000 | 90.402477 | 92.414861 | 646 | |
| Massachusetts | 100.000000 | 21.021021 | 32.132132 | 9.459459 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 98.048048 | 85.585586 | 89.639640 | 666 | |
| Michigan | 0.059595 | 12.693683 | 16.984505 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 12.693683 | 98.212157 | 78.843862 | 82.598331 | 1678 | |
| Minnesota | 0.000000 | 100.000000 | 9.090909 | 97.727273 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 97.727273 | 93.181818 | 93.181818 | 44 | |
| Mississippi | 0.000000 | 0.367647 | 87.132353 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 61.397059 | 96.323529 | 97.058824 | 272 | |
| New Jersey | 0.972763 | 55.058366 | 24.513619 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.610895 | 64.396887 | 77.821012 | 514 | |
| South Carolina | 0.000000 | 32.697548 | 20.163488 | 0.272480 | 88.555858 | 0.000000 | 0.000000 | 0.000000 | 98.365123 | 83.923706 | 91.553134 | 367 | |
| Utah | 0.000000 | 60.000000 | 60.000000 | 20.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 5 | |
| Wisconsin | 0.000000 | 71.428571 | 50.000000 | 0.000000 | 100.000000 | 0.000000 | 14.285714 | 0.000000 | 100.000000 | 85.714286 | 85.714286 | 14 | |
| Cryptosporidium | Oregon | 4.283361 | 17.462932 | 0.000000 | 0.000000 | 66.721582 | 0.000000 | 0.000000 | 0.000000 | 98.270181 | 91.762768 | 92.421746 | 1214 |
| Cyclospora | Iowa | 0.000000 | 13.523132 | 4.982206 | 0.000000 | 100.000000 | 0.000000 | 2.135231 | 0.000000 | 100.000000 | 96.441281 | 97.864769 | 281 |
| Oregon | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 10 | |
| Cyclosporiasis | Alaska | 0.000000 | 100.000000 | 25.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 4 |
| CT | 0.000000 | 97.674419 | 3.875969 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 98.449612 | 98.449612 | 98.449612 | 129 | |
| California | 7.500000 | 71.785714 | 16.071429 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 84.642857 | 100.000000 | 100.000000 | 280 | |
| Colorado | 0.000000 | 100.000000 | 7.339450 | 4.587156 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 98.165138 | 99.082569 | 109 | |
| Delaware | 0.000000 | 8.333333 | 66.666667 | 16.666667 | 83.333333 | 50.000000 | 100.000000 | 41.666667 | 83.333333 | 91.666667 | 91.666667 | 12 | |
| Illinois | 0.150830 | 40.648567 | 0.000000 | 18.174962 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 99.924585 | 92.684766 | 94.193062 | 1326 | |
| Indiana | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 66.666667 | 0.000000 | 33.333333 | 33.333333 | 100.000000 | 100.000000 | 100.000000 | 3 | |
| Massachusetts | 100.000000 | 20.955882 | 9.191176 | 3.308824 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 99.632353 | 95.588235 | 95.955882 | 272 | |
| Minnesota | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 88.888889 | 100.000000 | 100.000000 | 18 | |
| Mississippi | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| New Jersey | 0.000000 | 64.939024 | 31.707317 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.695122 | 84.756098 | 92.073171 | 328 | |
| South Carolina | 0.000000 | 17.073171 | 7.317073 | 0.000000 | 90.243902 | 0.000000 | 0.000000 | 0.000000 | 97.560976 | 95.121951 | 100.000000 | 41 | |
| Wisconsin | 0.000000 | 66.666667 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 66.666667 | 100.000000 | 100.000000 | 3 | |
| DENGUE HEM. FEVER | Georgia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Diphtheria | Alaska | 0.000000 | 75.000000 | 25.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 75.000000 | 75.000000 | 100.000000 | 4 |
| California | 0.000000 | 100.000000 | 50.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Colorado | 0.000000 | 100.000000 | 66.666667 | 33.333333 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 83.333333 | 83.333333 | 6 | |
| Idaho | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| E COLI SHIGA TOXIN | New York | 0.118835 | 0.415924 | 13.963161 | 0.000000 | 100.000000 | 0.178253 | 1.485443 | 0.000000 | 97.860963 | 70.053476 | 75.341652 | 1683 |
| E. coli Shgt. | Iowa | 0.150150 | 13.063063 | 8.408408 | 0.000000 | 100.000000 | 0.000000 | 0.450450 | 0.000000 | 99.549550 | 85.885886 | 90.690691 | 666 |
| EHRLICHIA CHAFFEENSIS | Georgia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 20.000000 | 100.000000 | 0.000000 | 100.000000 | 40.000000 | 60.000000 | 5 |
| EHRLICHIOSIS/ANAPLASMOSIS UNDETERMINED | New York | 0.609756 | 0.609756 | 65.853659 | 14.634146 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 89.024390 | 88.414634 | 89.634146 | 164 |
| Ehrlichia | Oregon | 0.000000 | 28.571429 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 71.428571 | 85.714286 | 85.714286 | 7 |
| Ehrlichia chaffeensis | CT | 0.000000 | 50.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 |
| Delaware | 0.000000 | 67.391304 | 5.434783 | 98.913043 | 98.913043 | 100.000000 | 98.913043 | 55.434783 | 92.391304 | 46.739130 | 46.739130 | 92 | |
| Illinois | 0.000000 | 43.076923 | 0.000000 | 36.923077 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 94.615385 | 46.923077 | 53.846154 | 130 | |
| Massachusetts | 100.000000 | 10.769231 | 10.769231 | 1.538462 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 78.461538 | 80.000000 | 65 | |
| Minnesota | 0.000000 | 100.000000 | 4.166667 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 70.833333 | 70.833333 | 70.833333 | 24 | |
| Mississippi | 0.000000 | 11.428571 | 8.571429 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 60.000000 | 54.285714 | 62.857143 | 35 | |
| New Jersey | 0.000000 | 47.619048 | 20.748299 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 54.081633 | 57.823129 | 294 | |
| Pennsylvania | 0.000000 | 58.333333 | 50.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 91.666667 | 91.666667 | 12 | |
| Ehrlichia chaffeensis infection | Virginia | 0.000000 | 57.487923 | 38.164251 | 0.000000 | 92.753623 | 78.260870 | 23.188406 | 71.497585 | 98.067633 | 66.666667 | 71.980676 | 207 |
| Ehrlichia ewingii | Delaware | 0.000000 | 50.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 2 |
| Illinois | 0.000000 | 50.000000 | 0.000000 | 25.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 25.000000 | 25.000000 | 4 | |
| Minnesota | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Mississippi | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 1 | |
| New Jersey | 0.000000 | 66.666667 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 33.333333 | 33.333333 | 3 | |
| Ehrlichia ewingii infection | Virginia | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 66.666667 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 3 |
| Ehrlichioses chaffeensis | Iowa | 0.000000 | 20.689655 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 3.448276 | 0.000000 | 100.000000 | 44.827586 | 72.413793 | 29 |
| Ehrlichioses ewingii | Iowa | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 |
| Ehrlichioses/Anaplasmosis undetermined | Iowa | 0.000000 | 12.500000 | 12.500000 | 0.000000 | 100.000000 | 0.000000 | 6.250000 | 0.000000 | 100.000000 | 56.250000 | 68.750000 | 16 |
| Francisella tularensis | Oregon | 0.000000 | 29.411765 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 70.588235 | 76.470588 | 17 |
| GIARDIASIS | Georgia | 0.300075 | 2.550638 | 0.000000 | 0.000000 | 100.000000 | 10.427607 | 100.000000 | 0.000000 | 40.735184 | 85.971493 | 92.123031 | 1333 |
| New York | 0.147710 | 0.393895 | 26.366322 | 8.813392 | 100.000000 | 0.073855 | 0.443131 | 0.000000 | 98.350566 | 88.823240 | 90.940423 | 4062 | |
| Giardia | Iowa | 0.000000 | 9.494949 | 35.555556 | 0.000000 | 100.000000 | 0.000000 | 1.212121 | 0.000000 | 100.000000 | 89.090909 | 90.909091 | 495 |
| Oregon | 0.146735 | 26.412326 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 97.212032 | 97.432135 | 97.945708 | 1363 | |
| Giardiasis | Alabama | 0.000000 | 3.370787 | 2.808989 | 0.000000 | 85.955056 | 100.000000 | 100.000000 | 83.707865 | 100.000000 | 89.325843 | 94.943820 | 178 |
| Alaska | 0.000000 | 85.321101 | 16.972477 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 98.165138 | 98.623853 | 218 | |
| CT | 0.000000 | 0.235849 | 88.207547 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 96.462264 | 98.349057 | 98.349057 | 424 | |
| California | 0.191939 | 84.420985 | 83.349328 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 93.714012 | 100.000000 | 100.000000 | 6252 | |
| Colorado | 0.000000 | 100.000000 | 81.935484 | 51.705069 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 96.774194 | 98.156682 | 98.801843 | 1085 | |
| Delaware | 0.000000 | 31.818182 | 72.727273 | 31.818182 | 93.181818 | 65.909091 | 100.000000 | 48.863636 | 97.727273 | 81.818182 | 85.227273 | 88 | |
| Idaho | 0.000000 | 6.666667 | 22.000000 | 0.000000 | 82.666667 | 0.000000 | 2.000000 | 6.000000 | 100.000000 | 95.333333 | 95.333333 | 150 | |
| Indiana | 0.000000 | 29.166667 | 41.666667 | 0.000000 | 79.166667 | 0.000000 | 29.166667 | 20.833333 | 100.000000 | 91.666667 | 91.666667 | 24 | |
| Maine | 0.000000 | 0.598802 | 3.892216 | 0.000000 | 98.203593 | 0.000000 | 0.000000 | 0.000000 | 35.029940 | 91.916168 | 96.107784 | 334 | |
| Massachusetts | 100.000000 | 22.672758 | 43.632210 | 8.909195 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 99.428898 | 95.259852 | 96.344946 | 1751 | |
| Michigan | 0.142383 | 21.499763 | 33.744661 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 21.452302 | 98.860940 | 90.697674 | 91.741813 | 2107 | |
| Minnesota | 0.000000 | 100.000000 | 22.340426 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 93.617021 | 93.617021 | 94 | |
| New Jersey | 0.207039 | 57.039337 | 28.364389 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.171843 | 83.747412 | 88.302277 | 966 | |
| Pennsylvania | 0.000000 | 16.086957 | 14.782609 | 0.217391 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 89.782609 | 94.130435 | 460 | |
| South Carolina | 0.000000 | 41.988950 | 27.071823 | 0.368324 | 88.766114 | 0.000000 | 0.000000 | 0.000000 | 96.685083 | 93.554328 | 96.500921 | 543 | |
| Utah | 0.000000 | 66.666667 | 50.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 83.333333 | 100.000000 | 100.000000 | 6 | |
| Wisconsin | 0.000000 | 77.777778 | 22.222222 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 88.888889 | 88.888889 | 88.888889 | 9 | |
| Gonorrhea | CT | 0.197889 | 99.538259 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 99.538259 | 100.000000 | 100.000000 | 1516 |
| Idaho | 0.105263 | 5.526316 | 92.052632 | 0.000000 | 99.789474 | 0.000000 | 0.157895 | 1.631579 | 97.263158 | 99.473684 | 99.526316 | 1900 | |
| Michigan | 0.017437 | 63.850625 | 83.746004 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 63.850625 | 100.000000 | 100.000000 | 100.000000 | 34410 | |
| North Carolina | 0.005425 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 99.721504 | 100.000000 | 100.000000 | 55297 | |
| South Carolina | 0.000000 | 0.081731 | 99.929167 | 95.172451 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 18353 | |
| HANTAVIRUS | New York | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 2 |
| HEMOLYTIC UREMIC SYNDROME | Georgia | 0.000000 | 2.702703 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 67.567568 | 0.000000 | 0.000000 | 37 |
| HEMOLYTIC UREMIC SYNDROME(HUS) | New York | 0.000000 | 0.000000 | 13.333333 | 16.666667 | 100.000000 | 10.000000 | 13.333333 | 0.000000 | 100.000000 | 0.000000 | 16.666667 | 30 |
| HEPATITIS A | New York | 0.000000 | 0.358423 | 12.186380 | 0.000000 | 100.000000 | 0.896057 | 0.896057 | 0.000000 | 97.491039 | 27.598566 | 50.358423 | 558 |
| HEPATITIS C Chronic | New York | 0.117009 | 0.768361 | 99.223839 | 16.057569 | 100.000000 | 0.085807 | 0.085807 | 0.000000 | 95.460041 | 94.371855 | 96.513125 | 25639 |
| HUS | Oregon | 0.000000 | 61.904762 | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 19.047619 | 21.428571 | 42 |
| Haemophilus influenzae | Oregon | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 |
| Hansen Disease (Leprosy) | Delaware | 0.000000 | 0.000000 | 50.000000 | 50.000000 | 100.000000 | 50.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 |
| Hansen disease (Leprosy) | Alaska | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 3 |
| CT | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 50.000000 | 100.000000 | 2 | |
| California | 0.000000 | 45.000000 | 45.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 20 | |
| Illinois | 0.000000 | 50.000000 | 0.000000 | 50.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 2 | |
| Massachusetts | 100.000000 | 0.000000 | 100.000000 | 50.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Minnesota | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Mississippi | 0.000000 | 0.000000 | 40.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 80.000000 | 80.000000 | 5 | |
| New Jersey | 0.000000 | 75.000000 | 50.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 4 | |
| Hansens disease | Iowa | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 40.000000 | 5 |
| Hantavirus | California | 0.000000 | 46.153846 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 69.230769 | 30.769231 | 38.461538 | 13 |
| Michigan | 0.000000 | 100.000000 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 33.333333 | 33.333333 | 3 | |
| Hantavirus infection | Indiana | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Montana | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Hantavirus pulmonary syndrome | Colorado | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 71.428571 | 85.714286 | 7 |
| Delaware | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Idaho | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 75.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 50.000000 | 4 | |
| Illinois | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Hantaviruses | Oregon | 0.000000 | 33.333333 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 16.666667 | 33.333333 | 6 |
| Hemolytic Uremic Syndrome | Michigan | 0.000000 | 29.411765 | 14.705882 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 29.411765 | 100.000000 | 11.764706 | 50.000000 | 34 |
| Hemolytic Uremic Syndrome (HUS) | Iowa | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 8 |
| Hemolytic uremic syndrome postdiarrheal | Alaska | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 50.000000 | 100.000000 | 2 |
| CT | 0.000000 | 50.000000 | 50.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| California | 0.404858 | 57.489879 | 14.979757 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 76.923077 | 28.340081 | 43.319838 | 247 | |
| Colorado | 0.000000 | 60.869565 | 26.086957 | 47.826087 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 4.347826 | 23 | |
| Illinois | 0.000000 | 36.842105 | 0.000000 | 15.789474 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 31.578947 | 19 | |
| Massachusetts | 100.000000 | 0.000000 | 0.000000 | 8.333333 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 50.000000 | 12 | |
| Minnesota | 0.000000 | 0.000000 | 4.878049 | 4.878049 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 97.560976 | 0.000000 | 2.439024 | 41 | |
| Mississippi | 0.000000 | 25.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 25.000000 | 0.000000 | 75.000000 | 4 | |
| New Jersey | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 4 | |
| South Carolina | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 3 | |
| Hepatitis A | Iowa | 0.000000 | 16.666667 | 16.666667 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 66.666667 | 83.333333 | 6 |
| Michigan | 0.299625 | 23.670412 | 17.977528 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 23.520599 | 98.801498 | 29.962547 | 45.093633 | 1335 | |
| Oregon | 0.000000 | 12.025316 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 96.835443 | 63.924051 | 68.354430 | 158 | |
| Hepatitis B (acute) | Oregon | 0.324675 | 6.493506 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 88.636364 | 80.519481 | 83.441558 | 308 |
| Hepatitis B (chronic) | Oregon | 0.047985 | 18.426104 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 95.249520 | 94.097889 | 95.201536 | 2084 |
| Hepatitis B Perinatal Infection | Louisiana | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 87.755102 | 100.000000 | 100.000000 | 49 |
| Hepatitis B acute | Iowa | 0.000000 | 51.612903 | 32.258065 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 51.612903 | 54.838710 | 31 |
| Hepatitis B chronic | Iowa | 0.000000 | 60.031348 | 93.260188 | 0.000000 | 100.000000 | 0.000000 | 2.194357 | 0.000000 | 96.238245 | 94.200627 | 95.297806 | 638 |
| Hepatitis C (acute) | Oregon | 0.000000 | 6.164384 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 97.260274 | 63.013699 | 66.438356 | 146 |
| Hepatitis C (past or present) | Oregon | 0.098971 | 24.813935 | 0.000000 | 0.003959 | 100.000000 | 0.003959 | 0.003959 | 0.000000 | 96.892320 | 98.745051 | 99.188440 | 25260 |
| Hepatitis C (perinatal) | Oregon | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 8 |
| Hepatitis C Past or Present Infection | Louisiana | 0.067776 | 0.092421 | 99.624153 | 0.000000 | 100.000000 | 100.000000 | 99.996919 | 0.021565 | 91.543438 | 99.756624 | 99.787431 | 32460 |
| Hepatitis C acute | Iowa | 0.000000 | 93.750000 | 31.250000 | 0.000000 | 100.000000 | 0.000000 | 12.500000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 16 |
| Hepatitis C past or present | Iowa | 0.000000 | 95.492085 | 38.300069 | 0.000000 | 100.000000 | 0.000000 | 6.813489 | 0.000000 | 96.111493 | 98.795595 | 99.070888 | 2906 |
| Hepatitis E | Michigan | 0.000000 | 36.666667 | 66.666667 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 36.666667 | 100.000000 | 66.666667 | 76.666667 | 30 |
| Oregon | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 75.000000 | 75.000000 | 4 | |
| Histoplasmosis | Illinois | 0.000000 | 31.614350 | 0.000000 | 14.125561 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 95.291480 | 51.569507 | 60.089686 | 446 |
| Kentucky | 0.000000 | 15.909091 | 48.863636 | 0.000000 | 92.045455 | 0.000000 | 3.409091 | 27.272727 | 100.000000 | 50.000000 | 65.909091 | 88 | |
| Michigan | 0.686499 | 26.544622 | 35.240275 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 25.858124 | 95.423341 | 64.759725 | 69.107551 | 437 | |
| Pennsylvania | 0.000000 | 42.105263 | 57.894737 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 63.157895 | 89.473684 | 19 | |
| LEGIONELLOSIS | Georgia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 39.892183 | 2.695418 | 13.746631 | 371 |
| New York | 0.000000 | 0.119760 | 1.956088 | 1.317365 | 100.000000 | 0.239521 | 0.319361 | 0.000000 | 98.922156 | 4.151697 | 26.826347 | 2505 | |
| LEPROSY | Georgia | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 25.000000 | 100.000000 | 0.000000 | 75.000000 | 100.000000 | 100.000000 | 4 |
| LEPTOSPIROSIS | Georgia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 33.333333 | 0.000000 | 33.333333 | 3 |
| LISTERIOSIS | Georgia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 10.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 10 |
| LYME DISEASE | New York | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 |
| Legionella | Oregon | 0.000000 | 23.188406 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 14.492754 | 20.289855 | 138 |
| Legionellosis | Alabama | 0.000000 | 1.666667 | 3.333333 | 0.000000 | 81.666667 | 98.333333 | 45.000000 | 86.666667 | 100.000000 | 16.666667 | 43.333333 | 60 |
| Alaska | 0.000000 | 84.615385 | 38.461538 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 61.538462 | 84.615385 | 13 | |
| CT | 0.000000 | 99.696970 | 27.575758 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 97.878788 | 8.787879 | 40.606061 | 330 | |
| California | 0.071891 | 74.119339 | 3.522646 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 97.124371 | 6.901510 | 18.691589 | 1391 | |
| Colorado | 0.000000 | 99.122807 | 10.087719 | 4.385965 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 95.614035 | 9.649123 | 34.210526 | 228 | |
| Idaho | 0.000000 | 5.555556 | 5.555556 | 0.000000 | 66.666667 | 0.000000 | 0.000000 | 11.111111 | 94.444444 | 16.666667 | 41.666667 | 36 | |
| Illinois | 0.000000 | 21.649485 | 0.000000 | 9.460279 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 98.362644 | 3.699212 | 35.657975 | 1649 | |
| Indiana | 0.000000 | 11.428571 | 25.714286 | 0.000000 | 88.571429 | 0.000000 | 74.285714 | 85.714286 | 100.000000 | 20.000000 | 60.000000 | 35 | |
| Kentucky | 0.000000 | 6.164384 | 10.273973 | 0.000000 | 84.246575 | 0.000000 | 15.068493 | 36.986301 | 97.945205 | 10.958904 | 54.794521 | 146 | |
| Massachusetts | 100.000000 | 20.767494 | 25.056433 | 8.577878 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 98.419865 | 10.722348 | 34.875847 | 886 | |
| Michigan | 0.053022 | 16.224814 | 9.119830 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 16.224814 | 99.151644 | 3.605514 | 15.853659 | 1886 | |
| Minnesota | 0.190114 | 99.429658 | 5.893536 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 97.718631 | 6.273764 | 6.844106 | 526 | |
| Mississippi | 0.000000 | 2.547771 | 6.369427 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 62.420382 | 7.006369 | 51.592357 | 157 | |
| New Jersey | 0.000000 | 27.478261 | 1.391304 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.652174 | 8.695652 | 44.000000 | 575 | |
| Oregon | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 90.526316 | 7.368421 | 17.894737 | 95 | |
| Pennsylvania | 0.000000 | 1.528384 | 6.550218 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 8.951965 | 47.379913 | 458 | |
| South Carolina | 0.000000 | 26.341463 | 4.878049 | 0.487805 | 91.707317 | 0.000000 | 0.000000 | 0.000000 | 80.000000 | 26.829268 | 61.951220 | 205 | |
| Tennessee | 0.000000 | 10.000000 | 1.428571 | 0.000000 | 67.857143 | 0.000000 | 52.142857 | 60.714286 | 97.857143 | 4.285714 | 27.857143 | 140 | |
| Utah | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Virginia | 0.000000 | 11.699779 | 10.816777 | 0.000000 | 88.300221 | 0.220751 | 13.465784 | 82.560706 | 96.688742 | 7.505519 | 50.331126 | 453 | |
| Wisconsin | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Legionellosis (Legionnaire Disease) | Delaware | 0.000000 | 37.068966 | 3.448276 | 67.241379 | 70.689655 | 96.551724 | 99.137931 | 31.896552 | 96.551724 | 2.586207 | 4.310345 | 116 |
| Legionellosis Legionaires disease | Iowa | 0.000000 | 15.909091 | 5.681818 | 0.000000 | 100.000000 | 0.000000 | 4.545455 | 0.000000 | 100.000000 | 12.500000 | 43.181818 | 88 |
| Legionellosis Pontiac fever | Iowa | 0.000000 | 33.333333 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 6 |
| Leprosy | Michigan | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Leptospira | Oregon | 0.000000 | 16.666667 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 25.000000 | 25.000000 | 12 |
| Leptospirosis | Alabama | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 1 |
| California | 0.000000 | 70.370370 | 3.703704 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 92.592593 | 22.222222 | 18.518519 | 27 | |
| Illinois | 0.000000 | 16.666667 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 8.333333 | 58.333333 | 12 | |
| Michigan | 0.000000 | 46.666667 | 13.333333 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 46.666667 | 93.333333 | 6.666667 | 13.333333 | 15 | |
| Montana | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Pennsylvania | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| South Carolina | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 1 | |
| Listeria | Colorado | 0.000000 | 100.000000 | 0.000000 | 8.333333 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 12.500000 | 24 |
| Listeriosis | Illinois | 0.000000 | 21.052632 | 0.000000 | 3.508772 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 98.245614 | 8.771930 | 42.105263 | 57 |
| Massachusetts | 100.000000 | 21.621622 | 21.621622 | 10.810811 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 10.810811 | 54.054054 | 37 | |
| Michigan | 0.000000 | 7.142857 | 7.142857 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 7.142857 | 100.000000 | 100.000000 | 100.000000 | 28 | |
| Pennsylvania | 0.000000 | 13.888889 | 16.666667 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 13.888889 | 63.888889 | 36 | |
| MALARIA | Georgia | 0.000000 | 11.627907 | 0.000000 | 0.000000 | 100.000000 | 3.875969 | 100.000000 | 0.000000 | 48.062016 | 36.434109 | 51.162791 | 129 |
| Malaria | Alaska | 0.000000 | 64.285714 | 42.857143 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 78.571429 | 100.000000 | 14 |
| CT | 0.000000 | 94.117647 | 47.058824 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 88.235294 | 52.941176 | 100.000000 | 17 | |
| California | 0.306748 | 63.803681 | 5.214724 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 96.012270 | 26.687117 | 36.196319 | 326 | |
| Colorado | 0.000000 | 98.630137 | 4.109589 | 5.479452 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 94.520548 | 41.095890 | 54.794521 | 73 | |
| Delaware | 0.000000 | 51.162791 | 27.906977 | 90.697674 | 100.000000 | 93.023256 | 100.000000 | 44.186047 | 97.674419 | 58.139535 | 58.139535 | 43 | |
| Idaho | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Illinois | 0.000000 | 20.304569 | 0.000000 | 14.720812 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 97.461929 | 29.949239 | 47.715736 | 197 | |
| Indiana | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 50.000000 | 0.000000 | 50.000000 | 50.000000 | 100.000000 | 0.000000 | 50.000000 | 2 | |
| Iowa | 0.000000 | 9.411765 | 2.352941 | 0.000000 | 100.000000 | 0.000000 | 1.176471 | 0.000000 | 100.000000 | 47.058824 | 57.647059 | 85 | |
| Massachusetts | 100.000000 | 23.045267 | 31.275720 | 13.580247 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 99.588477 | 100.000000 | 100.000000 | 243 | |
| Minnesota | 0.000000 | 99.200000 | 8.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 47.200000 | 44.800000 | 46.400000 | 125 | |
| Mississippi | 0.000000 | 18.181818 | 9.090909 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 72.727273 | 27.272727 | 54.545455 | 11 | |
| Montana | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 50.000000 | 0.000000 | 0.000000 | 50.000000 | 50.000000 | 100.000000 | 2 | |
| New Jersey | 0.000000 | 11.790393 | 0.873362 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.563319 | 23.580786 | 30.567686 | 229 | |
| Pennsylvania | 0.000000 | 9.000000 | 9.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 29.000000 | 48.000000 | 100 | |
| Rhode Island | 0.000000 | 42.857143 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 14.285714 | 14.285714 | 7 | |
| Mumps | Utah | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 1 |
| Neisseria gonorrhoeae | Oregon | 0.635359 | 3.453039 | 100.000000 | 0.027624 | 100.000000 | 0.027624 | 0.027624 | 0.000000 | 60.386740 | 99.530387 | 99.585635 | 3620 |
| Novel Coronavirus | Illinois | 0.054083 | 21.579232 | 0.000000 | 23.309897 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 71.768524 | 66.197945 | 75.013521 | 1849 |
| Michigan | 0.000000 | 26.682692 | 11.057692 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 26.682692 | 100.000000 | 74.278846 | 94.230769 | 416 | |
| New Jersey | 0.000000 | 92.619926 | 84.594096 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 34.409594 | 90.129151 | 92.250923 | 1084 | |
| Novel Coronavirus 2019 | Colorado | 0.248211 | 100.000000 | 50.040406 | 27.528284 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 52.020319 | 83.999076 | 92.617178 | 17324 |
| Novel Coronavirus COVID-19 | Michigan | 0.159727 | 22.265999 | 17.655202 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 22.223405 | 75.135768 | 70.077734 | 81.173464 | 9391 |
| PSITTACOSIS | Georgia | 0.000000 | 45.161290 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 51.612903 | 74.193548 | 31 |
| New York | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 33.333333 | 33.333333 | 3 | |
| Parathypoid | California | 0.000000 | 44.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 26.000000 | 34.000000 | 50 |
| Paratyphi | Colorado | 0.000000 | 100.000000 | 25.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 25.000000 | 25.000000 | 4 |
| Paratyphi A | Iowa | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Paratyphi B | Iowa | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Paratyphoid Fever | CT | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Michigan | 0.000000 | 14.285714 | 14.285714 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 14.285714 | 100.000000 | 42.857143 | 42.857143 | 7 | |
| New Jersey | 0.000000 | 75.000000 | 25.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 75.000000 | 75.000000 | 4 | |
| Paratyphoid Fever (cause by Salmonella Paratyphi A) | CT | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 33.333333 | 33.333333 | 9 |
| Paratyphoid fever | Alaska | 0.000000 | 50.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 |
| Massachusetts | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 25.000000 | 4 | |
| Oregon | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 2 | |
| Paratyphoid fever (caused by Salmonella serotypes | Delaware | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Perinatal Hepatitis B | Oregon | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 83.333333 | 100.000000 | 100.000000 | 6 |
| Pertussis | Utah | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 4 |
| Plague | California | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Idaho | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 1 | |
| Plasmodium | Oregon | 0.000000 | 5.714286 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 97.142857 | 40.000000 | 40.000000 | 35 |
| Polio | Oregon | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 5 |
| Poliovirus infection nonparalytic | Idaho | 0.000000 | 64.102564 | 82.051282 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 92.307692 | 100.000000 | 100.000000 | 39 |
| Psittacosis | Michigan | 0.000000 | 0.000000 | 37.500000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 8 |
| Psittacosis (Ornithosis) | California | 0.000000 | 100.000000 | 60.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 80.000000 | 80.000000 | 5 |
| Colorado | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Idaho | 0.000000 | 66.666667 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 3 | |
| Illinois | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 2 | |
| Massachusetts | 100.000000 | 0.000000 | 50.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 50.000000 | 50.000000 | 2 | |
| Oregon | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Q FEVER ACUTE | New York | 0.000000 | 0.000000 | 40.000000 | 6.666667 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 93.333333 | 46.666667 | 60.000000 | 15 |
| Q FEVER CHRONIC | New York | 0.000000 | 0.000000 | 75.000000 | 25.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 50.000000 | 75.000000 | 4 |
| Q Fever | California | 0.000000 | 74.626866 | 21.890547 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 94.527363 | 37.810945 | 45.771144 | 201 |
| Q Fever Acute | Iowa | 0.000000 | 16.666667 | 8.333333 | 0.000000 | 100.000000 | 0.000000 | 4.166667 | 0.000000 | 100.000000 | 16.666667 | 16.666667 | 24 |
| Michigan | 0.000000 | 25.000000 | 31.250000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 25.000000 | 100.000000 | 18.750000 | 18.750000 | 16 | |
| Q Fever Chronic | Iowa | 0.000000 | 0.000000 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 3 |
| Michigan | 0.000000 | 50.000000 | 70.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 50.000000 | 100.000000 | 40.000000 | 60.000000 | 10 | |
| Q fever | Kentucky | 0.000000 | 28.571429 | 28.571429 | 0.000000 | 100.000000 | 0.000000 | 14.285714 | 14.285714 | 100.000000 | 71.428571 | 85.714286 | 7 |
| ROCKY MOUNTAIN SPOTTED FEVER | Georgia | 0.000000 | 3.703704 | 0.000000 | 0.000000 | 100.000000 | 5.555556 | 100.000000 | 0.000000 | 98.148148 | 68.518519 | 72.222222 | 54 |
| ROCKY MTN SPOTD FE | New York | 0.000000 | 1.416431 | 53.257790 | 15.297450 | 100.000000 | 0.283286 | 0.283286 | 0.000000 | 98.016997 | 81.586402 | 84.702550 | 353 |
| Rickettsia | Oregon | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 81.818182 | 81.818182 | 81.818182 | 11 |
| Rickettsia rickettsii | Oregon | 0.000000 | 13.333333 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 80.000000 | 80.000000 | 15 |
| Rickettsial Disease - Spotted Fever | Michigan | 0.000000 | 17.307692 | 25.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 17.307692 | 100.000000 | 67.307692 | 67.307692 | 52 |
| Rickettsial Disease - Spotted Fever (Pre-2020)* | Michigan | 0.000000 | 7.692308 | 30.769231 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 7.692308 | 100.000000 | 61.538462 | 76.923077 | 13 |
| Rocky Mountain spotted fever | Iowa | 0.000000 | 18.181818 | 4.545455 | 0.000000 | 100.000000 | 0.000000 | 22.727273 | 0.000000 | 100.000000 | 61.363636 | 65.909091 | 44 |
| Mississippi | 0.000000 | 26.388889 | 11.574074 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 61.805556 | 83.796296 | 87.268519 | 432 | |
| SALMONELLOSIS | Georgia | 0.016155 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 2.423263 | 100.000000 | 0.000000 | 97.512116 | 50.516963 | 68.287561 | 6190 |
| New York | 0.117845 | 0.572391 | 14.074074 | 5.824916 | 100.000000 | 0.185185 | 0.387205 | 0.000000 | 99.225589 | 67.710438 | 73.080808 | 5940 | |
| SALMONELLOSIS - paratyphi | New York | 0.000000 | 4.545455 | 9.090909 | 9.090909 | 100.000000 | 4.545455 | 4.545455 | 0.000000 | 100.000000 | 22.727273 | 45.454545 | 22 |
| SHIGA TOXIN PRODUCING E.COLI (STEC) | Georgia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.233100 | 100.000000 | 0.000000 | 67.599068 | 59.207459 | 74.125874 | 429 |
| SHIGELLOSIS | Georgia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 1.697793 | 100.000000 | 0.000000 | 64.855688 | 40.407470 | 62.563667 | 1178 |
| New York | 0.210526 | 1.263158 | 13.473684 | 5.403509 | 100.000000 | 0.070175 | 0.842105 | 0.000000 | 98.105263 | 67.719298 | 72.631579 | 1425 | |
| STREP PNEUMO INVASIVE INTERMED | New York | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 |
| STREPTOCOCCAL TOXIC SHOCK SYNDROME | Georgia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 51.851852 | 0.000000 | 1.234568 | 81 |
| Salmonella | Oregon | 0.000000 | 31.818182 | 0.000000 | 0.000000 | 98.731501 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 78.118393 | 78.329810 | 946 |
| Salmonella enterica Typhi infection (S. Typhi infection) | Illinois | 0.000000 | 22.580645 | 0.000000 | 9.677419 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 22.580645 | 38.709677 | 31 |
| Salmonella enterica serotype Typhi (S.Typhi) infection) | Massachusetts | 100.000000 | 21.428571 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 78.571429 | 7.142857 | 50.000000 | 14 |
| South Carolina | 0.000000 | 66.666667 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 83.333333 | 50.000000 | 66.666667 | 6 | |
| Salmonella enterica typhi (S.typhi) infection | Maine | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 0.000000 | 50.000000 | 0.000000 | 0.000000 | 2 |
| Salmonellosis | Alaska | 0.000000 | 90.000000 | 22.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 92.666667 | 94.666667 | 150 |
| CT | 0.000000 | 99.357798 | 13.211009 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 85.871560 | 69.541284 | 70.642202 | 1090 | |
| California | 0.292765 | 65.462150 | 14.864074 | 100.000000 | 100.000000 | 0.016729 | 0.016729 | 0.016729 | 95.165203 | 69.109159 | 72.906734 | 11955 | |
| Colorado | 0.055960 | 99.888081 | 12.982652 | 5.931729 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 85.058758 | 78.175713 | 81.085618 | 1787 | |
| Delaware | 0.000000 | 88.829787 | 98.404255 | 89.893617 | 98.936170 | 100.000000 | 100.000000 | 88.829787 | 100.000000 | 96.276596 | 96.276596 | 188 | |
| Illinois | 0.128205 | 34.923077 | 0.000000 | 17.461538 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 99.846154 | 70.820513 | 75.974359 | 3900 | |
| Iowa | 0.089686 | 16.412556 | 17.757848 | 0.000000 | 100.000000 | 0.000000 | 1.614350 | 0.000000 | 99.013453 | 82.062780 | 86.008969 | 1115 | |
| Massachusetts | 100.000000 | 22.983521 | 27.233304 | 7.111882 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 76.669558 | 79.011275 | 1153 | |
| Michigan | 0.778470 | 19.217082 | 14.034698 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 19.172598 | 98.643238 | 65.947509 | 70.974199 | 4496 | |
| Minnesota | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Mississippi | 0.142980 | 1.830140 | 80.011438 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 64.312268 | 95.052902 | 96.368316 | 3497 | |
| New Jersey | 0.059719 | 47.596297 | 22.155867 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 93.938489 | 73.335324 | 80.859958 | 3349 | |
| Oregon | 0.345722 | 4.840104 | 0.000000 | 0.000000 | 24.114088 | 0.000000 | 0.000000 | 0.000000 | 86.689715 | 80.553155 | 80.726016 | 1157 | |
| South Carolina | 0.000000 | 37.982960 | 18.228651 | 0.217951 | 76.223499 | 0.000000 | 0.000000 | 0.000000 | 69.665148 | 75.926293 | 81.949673 | 5047 | |
| Wisconsin | 0.000000 | 80.000000 | 20.000000 | 0.000000 | 100.000000 | 0.000000 | 60.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 5 | |
| Salmonellosis (excl paratyphoid fever and typ | Delaware | 0.000000 | 88.837209 | 57.209302 | 93.953488 | 99.069767 | 97.209302 | 100.000000 | 22.790698 | 100.000000 | 66.511628 | 66.511628 | 215 |
| Salmonellosis (excluding S. Typhi infection and S. Paratyphi infection) | Florida | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Illinois | 0.139470 | 30.729893 | 0.000000 | 6.508601 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 93.537889 | 68.526267 | 74.291027 | 2151 | |
| Massachusetts | 100.000000 | 21.909233 | 27.699531 | 8.215962 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 83.333333 | 76.369327 | 79.264476 | 1278 | |
| Utah | 4.347826 | 78.260870 | 73.913043 | 8.695652 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 82.608696 | 100.000000 | 100.000000 | 23 | |
| Wisconsin | 0.000000 | 100.000000 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 3 | |
| Salmonellosis (excluding S.typhi and paratyphi) | Maine | 0.000000 | 0.000000 | 3.947368 | 0.000000 | 84.868421 | 0.000000 | 0.000000 | 0.000000 | 74.342105 | 71.710526 | 82.236842 | 152 |
| Salmonellosis (excluding paratyphoid fever and typhoid fever) | Massachusetts | 100.000000 | 22.971888 | 28.433735 | 7.871486 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 74.538153 | 78.072289 | 1245 |
| Salmonellosis (excluding paratyphoid) 2018 only | Maine | 0.000000 | 1.694915 | 1.694915 | 0.000000 | 83.050847 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 71.186441 | 77.118644 | 118 |
| Shiga toxin-producing E coli (STEC) | Delaware | 0.000000 | 50.769231 | 52.307692 | 58.461538 | 92.307692 | 98.461538 | 100.000000 | 53.846154 | 93.846154 | 72.307692 | 76.923077 | 65 |
| Shiga toxin-producing Escherichia coli (STEC) | Alaska | 0.000000 | 88.095238 | 9.523810 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 97.619048 | 100.000000 | 42 |
| CT | 0.000000 | 99.270073 | 8.759124 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 88.686131 | 76.277372 | 77.737226 | 274 | |
| California | 0.472973 | 56.689189 | 10.709459 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 57.094595 | 73.665541 | 76.706081 | 5920 | |
| Colorado | 0.000000 | 100.000000 | 9.693373 | 4.253215 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 95.252226 | 82.492582 | 84.272997 | 1011 | |
| Indiana | 0.000000 | 40.740741 | 33.333333 | 0.000000 | 77.777778 | 0.000000 | 37.037037 | 22.222222 | 100.000000 | 70.370370 | 81.481481 | 27 | |
| Massachusetts | 100.000000 | 10.958904 | 11.415525 | 5.022831 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 95.205479 | 77.397260 | 83.561644 | 438 | |
| Minnesota | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Mississippi | 0.000000 | 4.471545 | 9.756098 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 48.373984 | 73.983740 | 84.959350 | 246 | |
| New Jersey | 0.000000 | 41.871921 | 15.270936 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 74.876847 | 81.280788 | 203 | |
| South Carolina | 0.000000 | 40.921409 | 15.176152 | 0.271003 | 83.468835 | 0.000000 | 0.000000 | 0.000000 | 69.647696 | 82.655827 | 91.056911 | 369 | |
| Utah | 13.636364 | 72.727273 | 54.545455 | 4.545455 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 90.909091 | 100.000000 | 100.000000 | 22 | |
| Wisconsin | 0.000000 | 50.000000 | 37.500000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 8 | |
| Shiga toxin-producing Escherichia coli (STEC) | Illinois | 0.069930 | 35.034965 | 0.000000 | 9.930070 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 97.552448 | 72.867133 | 78.111888 | 1430 |
| Shiga toxin-producing Escherichia coli -(STEC Pre-2019)* | Michigan | 0.000000 | 20.270270 | 10.810811 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 20.270270 | 100.000000 | 68.918919 | 74.324324 | 74 |
| Shiga toxin-producing Escherichia coli -(STEC) | Michigan | 0.877193 | 17.543860 | 10.635965 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 17.543860 | 99.232456 | 67.872807 | 71.600877 | 912 |
| Shiga-toxigenic Escherichia coli | Oregon | 0.924370 | 16.470588 | 0.000000 | 0.000000 | 47.478992 | 0.000000 | 0.000000 | 0.000000 | 96.722689 | 81.596639 | 81.596639 | 1190 |
| Shigella | Oregon | 3.488372 | 20.413437 | 0.000000 | 0.000000 | 43.410853 | 0.000000 | 0.000000 | 0.000000 | 95.607235 | 80.749354 | 80.878553 | 774 |
| Shigellosis | Alaska | 0.000000 | 90.476190 | 23.809524 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 21 |
| Arizona | 0.000000 | 60.000000 | 60.000000 | 20.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 80.000000 | 100.000000 | 5 | |
| CT | 0.000000 | 99.170124 | 15.352697 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 87.966805 | 65.975104 | 66.390041 | 241 | |
| California | 0.408233 | 67.528491 | 17.979248 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 94.199694 | 68.072801 | 71.985031 | 5879 | |
| Colorado | 0.000000 | 99.826690 | 12.131716 | 5.545927 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 94.800693 | 78.682842 | 78.856153 | 577 | |
| Delaware | 0.000000 | 66.315789 | 65.263158 | 73.684211 | 91.578947 | 100.000000 | 100.000000 | 86.315789 | 98.947368 | 78.947368 | 78.947368 | 95 | |
| Illinois | 0.074738 | 31.240658 | 0.000000 | 18.609865 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 97.384155 | 71.524664 | 74.588939 | 1338 | |
| Indiana | 0.000000 | 42.857143 | 21.428571 | 0.000000 | 92.857143 | 0.000000 | 35.714286 | 50.000000 | 100.000000 | 85.714286 | 85.714286 | 14 | |
| Iowa | 0.000000 | 12.962963 | 10.185185 | 0.000000 | 100.000000 | 0.000000 | 0.925926 | 0.000000 | 99.537037 | 87.037037 | 89.351852 | 216 | |
| Massachusetts | 100.000000 | 28.429986 | 31.683168 | 9.900990 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 98.585573 | 79.773692 | 81.753890 | 707 | |
| Michigan | 0.979192 | 28.518972 | 14.565483 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 28.518972 | 98.776010 | 72.888617 | 75.091799 | 1634 | |
| Mississippi | 0.000000 | 1.840491 | 73.159509 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 54.907975 | 96.165644 | 97.852761 | 652 | |
| New Jersey | 0.569106 | 65.691057 | 18.943089 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.674797 | 79.918699 | 85.040650 | 1230 | |
| South Carolina | 0.000000 | 44.059406 | 14.851485 | 1.608911 | 77.475248 | 0.000000 | 0.000000 | 0.000000 | 72.772277 | 84.653465 | 87.871287 | 808 | |
| Utah | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 3 | |
| Wisconsin | 0.000000 | 80.000000 | 70.000000 | 0.000000 | 100.000000 | 0.000000 | 60.000000 | 0.000000 | 90.000000 | 80.000000 | 90.000000 | 10 | |
| Spotted Fever Rickettsiosis | CT | 0.000000 | 96.551724 | 24.137931 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 29 |
| California | 0.000000 | 87.179487 | 11.538462 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 48.717949 | 52.564103 | 78 | |
| Colorado | 0.000000 | 100.000000 | 0.000000 | 11.111111 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 11.111111 | 55.555556 | 55.555556 | 9 | |
| Idaho | 0.000000 | 13.043478 | 39.130435 | 0.000000 | 91.304348 | 0.000000 | 0.000000 | 4.347826 | 95.652174 | 86.956522 | 86.956522 | 23 | |
| Illinois | 0.000000 | 41.355140 | 0.000000 | 37.149533 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 98.831776 | 70.560748 | 74.299065 | 428 | |
| Indiana | 0.000000 | 71.823204 | 76.243094 | 0.000000 | 96.132597 | 0.000000 | 83.977901 | 87.845304 | 100.000000 | 96.132597 | 98.895028 | 181 | |
| Massachusetts | 100.000000 | 18.888889 | 14.444444 | 1.111111 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 76.666667 | 80.000000 | 90 | |
| Minnesota | 0.000000 | 100.000000 | 2.631579 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 68.421053 | 68.421053 | 71.052632 | 38 | |
| Montana | 3.703704 | 22.222222 | 40.740741 | 0.000000 | 88.888889 | 70.370370 | 3.703704 | 7.407407 | 33.333333 | 88.888889 | 96.296296 | 27 | |
| New Jersey | 0.298507 | 59.328358 | 20.149254 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 99.925373 | 74.477612 | 78.880597 | 1340 | |
| Pennsylvania | 0.000000 | 63.265306 | 65.306122 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 85.714286 | 89.795918 | 49 | |
| South Carolina | 0.000000 | 79.399500 | 70.558799 | 0.917431 | 99.916597 | 0.000000 | 0.000000 | 0.000000 | 95.663053 | 97.164304 | 98.165138 | 1199 | |
| Tennessee | 0.000000 | 56.068376 | 74.871795 | 0.000000 | 96.752137 | 0.000000 | 79.658120 | 57.606838 | 98.290598 | 95.384615 | 96.410256 | 585 | |
| Spotted Fever Rickettsiosis (including RMSF) | Virginia | 0.000000 | 74.914869 | 66.288309 | 0.113507 | 98.070375 | 73.666288 | 31.214529 | 70.601589 | 97.616345 | 91.827469 | 93.643587 | 881 |
| Spotted Fever Rickettsiosis (prev RMSF) | Delaware | 0.000000 | 66.412214 | 6.870229 | 98.473282 | 100.000000 | 98.473282 | 100.000000 | 67.175573 | 96.946565 | 76.335878 | 78.625954 | 131 |
| Staphylococcus aureus - vancomycin-intermediate | Iowa | 0.000000 | 0.000000 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 66.666667 | 3 |
| Streptococcal Toxic Shock | Michigan | 0.000000 | 7.142857 | 7.142857 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 7.142857 | 92.857143 | 7.142857 | 21.428571 | 14 |
| Streptococcal toxic shock syndrome | CT | 0.000000 | 100.000000 | 80.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 96.666667 | 51.666667 | 81.666667 | 60 |
| Colorado | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Illinois | 0.000000 | 33.333333 | 0.000000 | 18.181818 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 96.632997 | 4.040404 | 52.525253 | 297 | |
| Massachusetts | 100.000000 | 20.000000 | 11.428571 | 11.428571 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 60.000000 | 35 | |
| Minnesota | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 50.000000 | 100.000000 | 100.000000 | 22 | |
| New Jersey | 0.000000 | 37.500000 | 6.250000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 93.750000 | 0.000000 | 43.750000 | 16 | |
| Pennsylvania | 0.000000 | 50.000000 | 25.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 25.000000 | 100.000000 | 4 | |
| South Carolina | 0.000000 | 33.333333 | 16.666667 | 0.000000 | 66.666667 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 33.333333 | 50.000000 | 6 | |
| Utah | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Streptococcal toxic-shock syndrome | Idaho | 0.000000 | 16.666667 | 33.333333 | 16.666667 | 83.333333 | 0.000000 | 0.000000 | 16.666667 | 100.000000 | 16.666667 | 83.333333 | 6 |
| Maine | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 40.000000 | 0.000000 | 80.000000 | 5 | |
| Rhode Island | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Syphilis - Congenital | Michigan | 0.000000 | 85.714286 | 10.714286 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 85.714286 | 100.000000 | 100.000000 | 100.000000 | 28 |
| Syphilis - Early Latent | Michigan | 0.000000 | 64.538198 | 0.570125 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 64.538198 | 100.000000 | 100.000000 | 100.000000 | 877 |
| Syphilis - Latent of Unknown Duration* | Michigan | 0.000000 | 33.333333 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 33.333333 | 100.000000 | 100.000000 | 100.000000 | 3 |
| Syphilis - Primary | Michigan | 0.000000 | 67.573222 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 67.573222 | 100.000000 | 100.000000 | 100.000000 | 478 |
| Syphilis - Secondary | Michigan | 0.000000 | 70.126582 | 0.253165 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 70.126582 | 100.000000 | 100.000000 | 100.000000 | 790 |
| Syphilis - Unknown Duration or Late | Michigan | 0.000000 | 72.977778 | 0.355556 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 72.977778 | 100.000000 | 100.000000 | 100.000000 | 1125 |
| TOXIC SHOCK | New York | 0.000000 | 0.000000 | 16.666667 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 16.666667 | 6 |
| TOXIC SHOCK SYNDROME (STREPTOCOCCAL) | New York | 0.000000 | 0.000000 | 16.279070 | 58.139535 | 100.000000 | 32.558140 | 53.488372 | 0.000000 | 100.000000 | 2.325581 | 18.604651 | 43 |
| TULAREMIA | New York | 0.000000 | 0.000000 | 40.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 60.000000 | 80.000000 | 5 |
| TYPHOID | Georgia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 5.405405 | 100.000000 | 0.000000 | 78.378378 | 16.216216 | 16.216216 | 37 |
| New York | 0.000000 | 0.000000 | 2.197802 | 3.296703 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 98.901099 | 10.989011 | 30.769231 | 91 | |
| Tetanus | Alaska | 0.000000 | 100.000000 | 50.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 50.000000 | 100.000000 | 2 |
| Colorado | 0.000000 | 100.000000 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 66.666667 | 66.666667 | 3 | |
| Michigan | 0.000000 | 33.333333 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 33.333333 | 100.000000 | 33.333333 | 33.333333 | 3 | |
| Mississippi | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 2 | |
| Toxic Shock | Michigan | 0.000000 | 28.000000 | 8.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 28.000000 | 96.000000 | 4.000000 | 16.000000 | 25 |
| Toxic-shock syndrome (staphylococcal) | Colorado | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 11 |
| Illinois | 0.000000 | 50.000000 | 0.000000 | 16.666667 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 16.666667 | 6 | |
| South Carolina | 0.000000 | 50.000000 | 50.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 2 | |
| Trichinella spiralis | Oregon | 0.000000 | 60.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 40.000000 | 80.000000 | 5 |
| Trichinellosis | Alaska | 0.000000 | 100.000000 | 30.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 10 |
| Trichinosis | California | 0.000000 | 66.666667 | 11.111111 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 88.888889 | 88.888889 | 9 |
| Tularemia | Alaska | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 3 |
| California | 0.000000 | 52.941176 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 94.117647 | 17.647059 | 17.647059 | 17 | |
| Colorado | 0.000000 | 100.000000 | 20.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 46.666667 | 53.333333 | 15 | |
| Delaware | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Idaho | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| Illinois | 0.000000 | 28.571429 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 38.095238 | 47.619048 | 21 | |
| Indiana | 0.000000 | 66.666667 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 33.333333 | 66.666667 | 100.000000 | 100.000000 | 100.000000 | 3 | |
| Kentucky | 0.000000 | 7.692308 | 7.692308 | 0.000000 | 76.923077 | 0.000000 | 15.384615 | 38.461538 | 100.000000 | 76.923077 | 76.923077 | 13 | |
| Massachusetts | 100.000000 | 30.769231 | 23.076923 | 7.692308 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 23.076923 | 30.769231 | 13 | |
| Michigan | 0.000000 | 50.000000 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 50.000000 | 100.000000 | 83.333333 | 83.333333 | 6 | |
| Mississippi | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Montana | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 33.333333 | 66.666667 | 66.666667 | 3 | |
| New Jersey | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 3 | |
| Pennsylvania | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 | |
| South Carolina | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 | |
| Tennessee | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 | |
| Tularemia Glandular | Iowa | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 1 |
| Tularemia Pneumonic | Iowa | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 2 |
| Typhoid Fever | Iowa | 0.000000 | 66.666667 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 33.333333 | 33.333333 | 6 |
| Michigan | 0.000000 | 18.918919 | 10.810811 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 18.918919 | 100.000000 | 18.918919 | 27.027027 | 37 | |
| Typhoid Fever (Salmonella typhi) | Delaware | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 4 |
| Typhoid Fever? | Alaska | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 1 |
| Typhoid fever | Oregon | 0.000000 | 11.111111 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 22.222222 | 22.222222 | 9 |
| Typhoid fever (caused by Salmonella typhi) | Alaska | 0.000000 | 66.666667 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 3 |
| CT | 0.000000 | 92.857143 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 85.714286 | 7.142857 | 7.142857 | 14 | |
| California | 0.000000 | 54.077253 | 2.575107 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 94.849785 | 22.746781 | 32.618026 | 233 | |
| Colorado | 0.000000 | 100.000000 | 25.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 83.333333 | 25.000000 | 25.000000 | 12 | |
| Illinois | 0.000000 | 25.000000 | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 100.000000 | 26.923077 | 42.307692 | 52 | |
| Massachusetts | 100.000000 | 21.875000 | 12.500000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 28.125000 | 59.375000 | 32 | |
| Mississippi | 0.000000 | 25.000000 | 25.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 75.000000 | 25.000000 | 50.000000 | 4 | |
| New Jersey | 0.000000 | 46.666667 | 2.222222 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 53.333333 | 68.888889 | 45 | |
| South Carolina | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 33.333333 | 3 | |
| VANCOMYCIN INTERM STAPH AUREAU | New York | 0.000000 | 0.000000 | 50.000000 | 16.666667 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 33.333333 | 62.500000 | 24 |
| VANCOMYCIN RESIST STAPH AUREAU | New York | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 1 |
| VIBRIO | New York | 1.273885 | 0.318471 | 11.783439 | 5.732484 | 100.000000 | 0.318471 | 0.636943 | 0.000000 | 98.089172 | 73.885350 | 81.528662 | 314 |
| VIBRIOS-OTHER | Georgia | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 4.651163 | 100.000000 | 0.000000 | 79.069767 | 51.162791 | 66.279070 | 86 |
| VISA | Michigan | 0.000000 | 15.151515 | 63.636364 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 15.151515 | 90.909091 | 33.333333 | 48.484848 | 33 |
| Vancomycin-Resistant Enterococcus | Kentucky | 0.000000 | 0.000000 | 33.333333 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 66.666667 | 100.000000 | 3 |
| Vancomycin-intermediate Staphylococcus aureus (VISA) | Illinois | 0.000000 | 28.000000 | 0.000000 | 8.000000 | 100.000000 | 100.000000 | 0.000000 | 0.000000 | 84.000000 | 36.000000 | 60.000000 | 25 |
| Massachusetts | 100.000000 | 100.000000 | 100.000000 | 80.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 80.000000 | 80.000000 | 5 | |
| Minnesota | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 50.000000 | 2 | |
| Mississippi | 0.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 60.000000 | 100.000000 | 100.000000 | 5 | |
| New Jersey | 0.000000 | 40.000000 | 40.000000 | 20.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 40.000000 | 40.000000 | 5 | |
| Pennsylvania | 0.000000 | 0.000000 | 40.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 20.000000 | 80.000000 | 5 | |
| South Carolina | 0.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 1 | |
| Vancomycin-resistant Staphylococcus aureus (VRSA) | Massachusetts | 100.000000 | 100.000000 | 100.000000 | 75.000000 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 100.000000 | 4 |
| Varicella (Chickenpox) | Utah | 0.000000 | 66.666667 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 66.666667 | 100.000000 | 100.000000 | 3 |
| Vibrio | Oregon | 0.000000 | 38.461538 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 87.179487 | 89.743590 | 39 |
| Vibriosis | CT | 0.000000 | 100.000000 | 20.000000 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 94.615385 | 80.000000 | 82.307692 | 130 |
| Oregon | 0.000000 | 2.702703 | 0.000000 | 0.000000 | 31.081081 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 81.756757 | 81.756757 | 148 | |
| Vibriosis (any species of the family Vibrionaceae other than toxigenic Vibrio cholerae O1 or O139) | Colorado | 0.000000 | 100.000000 | 8.982036 | 8.383234 | 100.000000 | 0.000000 | 0.000000 | 0.000000 | 97.604790 | 83.233533 | 85.029940 | 167 |
| Massachusetts | 100.000000 | 22.932331 | 30.827068 | 6.766917 | 100.000000 | 0.000000 | 100.000000 | 100.000000 | 96.240602 | 79.699248 | 85.338346 | 266 | |
| Vibriosis (non-cholera Vibrio species infections) | Alaska | 0.000000 | 100.000000 | 11.111111 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 96.296296 | 96.296296 | 27 |
| Indiana | 0.000000 | 33.333333 | 66.666667 | 0.000000 | 66.666667 | 0.000000 | 66.666667 | 33.333333 | 100.000000 | 100.000000 | 100.000000 | 3 | |
| Kentucky | 0.000000 | 20.000000 | 25.714286 | 0.000000 | 82.857143 | 0.000000 | 25.714286 | 42.857143 | 100.000000 | 65.714286 | 80.000000 | 35 | |
| Mississippi | 0.000000 | 1.470588 | 10.294118 | 100.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 47.058824 | 48.529412 | 72.058824 | 68 | |
| Vibriosis (non-cholera Vibrio species) | Delaware | 0.000000 | 81.395349 | 65.116279 | 76.744186 | 97.674419 | 100.000000 | 100.000000 | 30.232558 | 97.674419 | 69.767442 | 69.767442 | 43 |
| Vibriosis - Non Cholera | Michigan | 0.000000 | 18.018018 | 18.018018 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 18.018018 | 99.099099 | 73.873874 | 77.477477 | 111 |
| Vibriosis - Non Cholera (Pre-2019)* | Michigan | 0.000000 | 0.000000 | 0.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 0.000000 | 100.000000 | 33.333333 | 33.333333 | 3 |
# Export table
missing_by_jurisdiction_and_condition.to_csv('./datasets/missing_by_jurisdiction_and_condition.csv')
sns.set(rc={'figure.figsize':(16,200)})
sns.heatmap(missing_by_jurisdiction_and_condition.drop(columns='sample_size'), cbar = False, cmap = "mako").figure.savefig("./figures/missing_by_jurisdiction_condition.png")
For any two date variable tuples (a, b), whenever both a and b are present, is a < b?
# Gather date tuples
date_tuples = list(combinations(list(set(date_vars) - set(['current_record_flag', 'Report_State_txt', 'Condition_Code_txt'])), 2))
date_tuples
[('Message_Dt', 'Birth_Date'),
('Message_Dt', 'Report_Dt'),
('Message_Dt', 'First_Elec_Submit_Dt'),
('Message_Dt', 'Illness_Onset_Dt'),
('Message_Dt', 'Invest_Start_Dt'),
('Message_Dt', 'Illness_End_Dt_str'),
('Message_Dt', 'PHD_Notif_Dt'),
('Message_Dt', 'Earliest_Cnty_Dt'),
('Message_Dt', 'mvps_datetime_created'),
('Message_Dt', 'Elect_Notif_CDC_Dt'),
('Message_Dt', 'Hosp_Admit_Dt'),
('Message_Dt', 'Diag_Dt'),
('Message_Dt', 'Hosp_Dis_Dt'),
('Message_Dt', 'msg_received_dttm'),
('Message_Dt', 'Earliest_State_Dt'),
('Message_Dt', 'mvps_datetime_updated'),
('Message_Dt', 'MMWR_Year'),
('Birth_Date', 'Report_Dt'),
('Birth_Date', 'First_Elec_Submit_Dt'),
('Birth_Date', 'Illness_Onset_Dt'),
('Birth_Date', 'Invest_Start_Dt'),
('Birth_Date', 'Illness_End_Dt_str'),
('Birth_Date', 'PHD_Notif_Dt'),
('Birth_Date', 'Earliest_Cnty_Dt'),
('Birth_Date', 'mvps_datetime_created'),
('Birth_Date', 'Elect_Notif_CDC_Dt'),
('Birth_Date', 'Hosp_Admit_Dt'),
('Birth_Date', 'Diag_Dt'),
('Birth_Date', 'Hosp_Dis_Dt'),
('Birth_Date', 'msg_received_dttm'),
('Birth_Date', 'Earliest_State_Dt'),
('Birth_Date', 'mvps_datetime_updated'),
('Birth_Date', 'MMWR_Year'),
('Report_Dt', 'First_Elec_Submit_Dt'),
('Report_Dt', 'Illness_Onset_Dt'),
('Report_Dt', 'Invest_Start_Dt'),
('Report_Dt', 'Illness_End_Dt_str'),
('Report_Dt', 'PHD_Notif_Dt'),
('Report_Dt', 'Earliest_Cnty_Dt'),
('Report_Dt', 'mvps_datetime_created'),
('Report_Dt', 'Elect_Notif_CDC_Dt'),
('Report_Dt', 'Hosp_Admit_Dt'),
('Report_Dt', 'Diag_Dt'),
('Report_Dt', 'Hosp_Dis_Dt'),
('Report_Dt', 'msg_received_dttm'),
('Report_Dt', 'Earliest_State_Dt'),
('Report_Dt', 'mvps_datetime_updated'),
('Report_Dt', 'MMWR_Year'),
('First_Elec_Submit_Dt', 'Illness_Onset_Dt'),
('First_Elec_Submit_Dt', 'Invest_Start_Dt'),
('First_Elec_Submit_Dt', 'Illness_End_Dt_str'),
('First_Elec_Submit_Dt', 'PHD_Notif_Dt'),
('First_Elec_Submit_Dt', 'Earliest_Cnty_Dt'),
('First_Elec_Submit_Dt', 'mvps_datetime_created'),
('First_Elec_Submit_Dt', 'Elect_Notif_CDC_Dt'),
('First_Elec_Submit_Dt', 'Hosp_Admit_Dt'),
('First_Elec_Submit_Dt', 'Diag_Dt'),
('First_Elec_Submit_Dt', 'Hosp_Dis_Dt'),
('First_Elec_Submit_Dt', 'msg_received_dttm'),
('First_Elec_Submit_Dt', 'Earliest_State_Dt'),
('First_Elec_Submit_Dt', 'mvps_datetime_updated'),
('First_Elec_Submit_Dt', 'MMWR_Year'),
('Illness_Onset_Dt', 'Invest_Start_Dt'),
('Illness_Onset_Dt', 'Illness_End_Dt_str'),
('Illness_Onset_Dt', 'PHD_Notif_Dt'),
('Illness_Onset_Dt', 'Earliest_Cnty_Dt'),
('Illness_Onset_Dt', 'mvps_datetime_created'),
('Illness_Onset_Dt', 'Elect_Notif_CDC_Dt'),
('Illness_Onset_Dt', 'Hosp_Admit_Dt'),
('Illness_Onset_Dt', 'Diag_Dt'),
('Illness_Onset_Dt', 'Hosp_Dis_Dt'),
('Illness_Onset_Dt', 'msg_received_dttm'),
('Illness_Onset_Dt', 'Earliest_State_Dt'),
('Illness_Onset_Dt', 'mvps_datetime_updated'),
('Illness_Onset_Dt', 'MMWR_Year'),
('Invest_Start_Dt', 'Illness_End_Dt_str'),
('Invest_Start_Dt', 'PHD_Notif_Dt'),
('Invest_Start_Dt', 'Earliest_Cnty_Dt'),
('Invest_Start_Dt', 'mvps_datetime_created'),
('Invest_Start_Dt', 'Elect_Notif_CDC_Dt'),
('Invest_Start_Dt', 'Hosp_Admit_Dt'),
('Invest_Start_Dt', 'Diag_Dt'),
('Invest_Start_Dt', 'Hosp_Dis_Dt'),
('Invest_Start_Dt', 'msg_received_dttm'),
('Invest_Start_Dt', 'Earliest_State_Dt'),
('Invest_Start_Dt', 'mvps_datetime_updated'),
('Invest_Start_Dt', 'MMWR_Year'),
('Illness_End_Dt_str', 'PHD_Notif_Dt'),
('Illness_End_Dt_str', 'Earliest_Cnty_Dt'),
('Illness_End_Dt_str', 'mvps_datetime_created'),
('Illness_End_Dt_str', 'Elect_Notif_CDC_Dt'),
('Illness_End_Dt_str', 'Hosp_Admit_Dt'),
('Illness_End_Dt_str', 'Diag_Dt'),
('Illness_End_Dt_str', 'Hosp_Dis_Dt'),
('Illness_End_Dt_str', 'msg_received_dttm'),
('Illness_End_Dt_str', 'Earliest_State_Dt'),
('Illness_End_Dt_str', 'mvps_datetime_updated'),
('Illness_End_Dt_str', 'MMWR_Year'),
('PHD_Notif_Dt', 'Earliest_Cnty_Dt'),
('PHD_Notif_Dt', 'mvps_datetime_created'),
('PHD_Notif_Dt', 'Elect_Notif_CDC_Dt'),
('PHD_Notif_Dt', 'Hosp_Admit_Dt'),
('PHD_Notif_Dt', 'Diag_Dt'),
('PHD_Notif_Dt', 'Hosp_Dis_Dt'),
('PHD_Notif_Dt', 'msg_received_dttm'),
('PHD_Notif_Dt', 'Earliest_State_Dt'),
('PHD_Notif_Dt', 'mvps_datetime_updated'),
('PHD_Notif_Dt', 'MMWR_Year'),
('Earliest_Cnty_Dt', 'mvps_datetime_created'),
('Earliest_Cnty_Dt', 'Elect_Notif_CDC_Dt'),
('Earliest_Cnty_Dt', 'Hosp_Admit_Dt'),
('Earliest_Cnty_Dt', 'Diag_Dt'),
('Earliest_Cnty_Dt', 'Hosp_Dis_Dt'),
('Earliest_Cnty_Dt', 'msg_received_dttm'),
('Earliest_Cnty_Dt', 'Earliest_State_Dt'),
('Earliest_Cnty_Dt', 'mvps_datetime_updated'),
('Earliest_Cnty_Dt', 'MMWR_Year'),
('mvps_datetime_created', 'Elect_Notif_CDC_Dt'),
('mvps_datetime_created', 'Hosp_Admit_Dt'),
('mvps_datetime_created', 'Diag_Dt'),
('mvps_datetime_created', 'Hosp_Dis_Dt'),
('mvps_datetime_created', 'msg_received_dttm'),
('mvps_datetime_created', 'Earliest_State_Dt'),
('mvps_datetime_created', 'mvps_datetime_updated'),
('mvps_datetime_created', 'MMWR_Year'),
('Elect_Notif_CDC_Dt', 'Hosp_Admit_Dt'),
('Elect_Notif_CDC_Dt', 'Diag_Dt'),
('Elect_Notif_CDC_Dt', 'Hosp_Dis_Dt'),
('Elect_Notif_CDC_Dt', 'msg_received_dttm'),
('Elect_Notif_CDC_Dt', 'Earliest_State_Dt'),
('Elect_Notif_CDC_Dt', 'mvps_datetime_updated'),
('Elect_Notif_CDC_Dt', 'MMWR_Year'),
('Hosp_Admit_Dt', 'Diag_Dt'),
('Hosp_Admit_Dt', 'Hosp_Dis_Dt'),
('Hosp_Admit_Dt', 'msg_received_dttm'),
('Hosp_Admit_Dt', 'Earliest_State_Dt'),
('Hosp_Admit_Dt', 'mvps_datetime_updated'),
('Hosp_Admit_Dt', 'MMWR_Year'),
('Diag_Dt', 'Hosp_Dis_Dt'),
('Diag_Dt', 'msg_received_dttm'),
('Diag_Dt', 'Earliest_State_Dt'),
('Diag_Dt', 'mvps_datetime_updated'),
('Diag_Dt', 'MMWR_Year'),
('Hosp_Dis_Dt', 'msg_received_dttm'),
('Hosp_Dis_Dt', 'Earliest_State_Dt'),
('Hosp_Dis_Dt', 'mvps_datetime_updated'),
('Hosp_Dis_Dt', 'MMWR_Year'),
('msg_received_dttm', 'Earliest_State_Dt'),
('msg_received_dttm', 'mvps_datetime_updated'),
('msg_received_dttm', 'MMWR_Year'),
('Earliest_State_Dt', 'mvps_datetime_updated'),
('Earliest_State_Dt', 'MMWR_Year'),
('mvps_datetime_updated', 'MMWR_Year')]
# Date parsing utility function for the function to follow
def dateParse(df, x):
# It seems that illness_end_dt_str are formatted as YYYYMMDD, while other datetime variables are YYYY-MM-DD.
# However, there are other peculiaries, such as illness_end_dt_str ending in .000 and datetime variables
# requiring their time component to be stripped away, which is hanlded by the string slicing below.
if x == 'Illness_End_Dt_str':
return pd.to_datetime(df[x].str.slice(start = 0, stop = 8), errors='coerce', format = '%Y%m%d')
else:
return pd.to_datetime(df[x].str.slice(start = 0, stop = 10), errors='coerce', format = '%Y-%m-%d')
# Function to process a date tuple and assess how often both dates were present, and if they were, how often a < b
def processTuple(tup):
# Unpack
a, b = tup
# Subset the data to complete cases (both a and b exist)
sub = core_dts[[a,b]]
sub_complete = sub.loc[~(sub[a].isna() | sub[b].isna()), :]
# Capture the sample size of this and the percentage of the data this represents
complete_cases = sub_complete.shape[0]
complete_case_pct = round(complete_cases / sub.shape[0] * 100,2)
# Depending on the variable type, it needs to be converted to a date differently because the dates are in varying formats
a_dates = dateParse(sub_complete, a)
b_dates = dateParse(sub_complete, b)
# Subtract and convert date differences to days
a_b = (a_dates - b_dates) / np.timedelta64(1, 'D')
# Gather statistics about this difference
a_b_mean = a_b.mean()
a_b_std = a_b.std()
a_b_median = a_b.median()
a_b_min = a_b.min()
a_b_max = a_b.max()
a_b_l95 = a_b.quantile(0.025)
a_b_u95 = a_b.quantile(0.975)
# Pass back a dataframe containing all difference information
return pd.DataFrame(data = {'Date1':[a],
'Date2':[b],
'Complete_Cases':[complete_cases],
'Complete_Case_Pct':[complete_case_pct],
'Min':[a_b_min],
'Max':[a_b_max],
'Mean':[a_b_mean],
'Std':[a_b_std],
'Median':[a_b_median],
'L95':[a_b_l95],
'U95':[a_b_u95]})
# Example of use of this function on a single tuple
processTuple(('Illness_Onset_Dt','Hosp_Dis_Dt'))
| Date1 | Date2 | Complete_Cases | Complete_Case_Pct | Min | Max | Mean | Std | Median | L95 | U95 | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | Illness_Onset_Dt | Hosp_Dis_Dt | 54502 | 5.78 | -32882.0 | 43868.0 | -9.45656 | 388.64615 | -7.0 | -37.0 | -1.0 |
# Call this on all date combination tuples
date_sequences = pd.concat([processTuple(x) for x in date_tuples])
# Show the distributions of pairwise date differences (Date1 - Date2)
# i.e. NEGATIVE differences imply Date1 came BEFORE Date2
# POSITIVE differences imply Date1 came AFTER Date2
date_sequences
| Date1 | Date2 | Complete_Cases | Complete_Case_Pct | Min | Max | Mean | Std | Median | L95 | U95 | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | Message_Dt | Birth_Date | 865509 | 91.82 | -5873.0 | 53818.0 | 12795.411752 | 6904.458343 | 10410.0 | 1539.000 | 28748.0 |
| 0 | Message_Dt | Report_Dt | 942582 | 100.00 | -66438.0 | 27175.0 | 227.652506 | 443.613889 | 180.0 | 1.000 | 557.0 |
| 0 | Message_Dt | First_Elec_Submit_Dt | 942582 | 100.00 | -1.0 | 4734.0 | 121.541082 | 190.572308 | 27.0 | 0.000 | 494.0 |
| 0 | Message_Dt | Illness_Onset_Dt | 507592 | 53.85 | -66409.0 | 29545.0 | 226.756044 | 318.035043 | 207.0 | 8.000 | 546.0 |
| 0 | Message_Dt | Invest_Start_Dt | 743535 | 78.88 | -3029.0 | 35679.0 | 240.339761 | 467.532811 | 193.0 | 1.000 | 554.0 |
| 0 | Message_Dt | Illness_End_Dt_str | 8415 | 0.89 | -24204.0 | 6240.0 | 94.991086 | 311.323187 | 28.0 | 0.000 | 448.0 |
| 0 | Message_Dt | PHD_Notif_Dt | 843807 | 89.52 | -66438.0 | 27175.0 | 207.591924 | 243.849562 | 193.0 | 1.000 | 525.0 |
| 0 | Message_Dt | Earliest_Cnty_Dt | 372103 | 39.48 | -310.0 | 10942.0 | 176.502116 | 241.236516 | 120.0 | 1.000 | 574.0 |
| 0 | Message_Dt | mvps_datetime_created | 942582 | 100.00 | -456.0 | 0.0 | -8.513965 | 41.043621 | 0.0 | -113.000 | 0.0 |
| 0 | Message_Dt | Elect_Notif_CDC_Dt | 942582 | 100.00 | -456.0 | 509.0 | 2.234370 | 14.762324 | 0.0 | 0.000 | 11.0 |
| 0 | Message_Dt | Hosp_Admit_Dt | 81267 | 8.62 | -32595.0 | 43258.0 | 173.808335 | 342.571274 | 98.0 | 6.000 | 634.0 |
| 0 | Message_Dt | Diag_Dt | 645161 | 68.45 | -66409.0 | 36078.0 | 267.664985 | 526.342214 | 222.0 | 5.000 | 594.0 |
| 0 | Message_Dt | Hosp_Dis_Dt | 60418 | 6.41 | -32758.0 | 43972.0 | 180.086946 | 549.172031 | 109.0 | 4.000 | 639.6 |
| 0 | Message_Dt | msg_received_dttm | 942582 | 100.00 | -456.0 | 0.0 | -0.833365 | 4.421492 | 0.0 | -3.000 | 0.0 |
| 0 | Message_Dt | Earliest_State_Dt | 739578 | 78.46 | -66438.0 | 23579.0 | 243.518912 | 479.917674 | 196.0 | 1.000 | 579.0 |
| 0 | Message_Dt | mvps_datetime_updated | 97030 | 10.29 | -456.0 | 0.0 | -1.274152 | 3.385192 | -1.0 | -3.000 | 0.0 |
| 0 | Message_Dt | MMWR_Year | 942306 | 99.97 | -2.0 | 28237.0 | 398.384840 | 442.794407 | 406.0 | 78.000 | 784.0 |
| 0 | Birth_Date | Report_Dt | 865509 | 91.82 | -88395.0 | 8312.0 | -12551.821133 | 6915.757851 | -10157.0 | -28598.000 | -1356.0 |
| 0 | Birth_Date | First_Elec_Submit_Dt | 865509 | 91.82 | -53461.0 | 5873.0 | -12666.467523 | 6910.648229 | -10274.0 | -28677.000 | -1446.0 |
| 0 | Birth_Date | Illness_Onset_Dt | 473255 | 50.21 | -73622.0 | 4316.0 | -12584.516024 | 7220.404919 | -10110.0 | -28951.000 | -819.0 |
| 0 | Birth_Date | Invest_Start_Dt | 683700 | 72.53 | -53426.0 | 30937.0 | -12412.607026 | 6697.944592 | -10011.0 | -28261.000 | -2051.0 |
| 0 | Birth_Date | Illness_End_Dt_str | 8381 | 0.89 | -53924.0 | 6081.0 | -14477.837470 | 8747.551792 | -14601.5 | -29544.525 | -304.0 |
| 0 | Birth_Date | PHD_Notif_Dt | 767044 | 81.38 | -88395.0 | 8312.0 | -11966.768138 | 6621.961218 | -9658.0 | -28090.000 | -1429.0 |
| 0 | Birth_Date | Earliest_Cnty_Dt | 371574 | 39.42 | -53426.0 | 165.0 | -14090.568199 | 7658.970425 | -12379.0 | -29711.000 | -834.0 |
| 0 | Birth_Date | mvps_datetime_created | 865509 | 91.82 | -54080.0 | 5873.0 | -12804.645178 | 6908.317199 | -10415.0 | -28762.000 | -1566.0 |
| 0 | Birth_Date | Elect_Notif_CDC_Dt | 865509 | 91.82 | -53818.0 | 5873.0 | -12792.993699 | 6903.960727 | -10409.0 | -28744.000 | -1531.0 |
| 0 | Birth_Date | Hosp_Admit_Dt | 72919 | 7.74 | -42502.0 | 811.0 | -18281.905841 | 8865.110050 | -19823.0 | -32502.000 | -424.0 |
| 0 | Birth_Date | Diag_Dt | 609241 | 64.64 | -73622.0 | 3603.0 | -11937.178414 | 6477.296260 | -9675.0 | -27481.000 | -1546.0 |
| 0 | Birth_Date | Hosp_Dis_Dt | 54940 | 5.83 | -57152.0 | 808.0 | -17985.147618 | 8821.452247 | -19444.0 | -32319.550 | -435.0 |
| 0 | Birth_Date | msg_received_dttm | 865509 | 91.82 | -53818.0 | 5873.0 | -12796.306498 | 6904.483404 | -10411.0 | -28749.000 | -1539.0 |
| 0 | Birth_Date | Earliest_State_Dt | 738683 | 78.37 | -88395.0 | 5874.0 | -12668.264760 | 6969.723157 | -10304.0 | -28561.000 | -1233.0 |
| 0 | Birth_Date | mvps_datetime_updated | 63088 | 6.69 | -43944.0 | 184.0 | -15410.007244 | 8143.959531 | -14288.0 | -32032.825 | -915.0 |
| 0 | Birth_Date | MMWR_Year | 865233 | 91.79 | -53325.0 | 5981.0 | -12373.836093 | 6915.152670 | -9985.0 | -28419.200 | -1166.8 |
| 0 | Report_Dt | First_Elec_Submit_Dt | 942582 | 100.00 | -27174.0 | 66438.0 | -106.111424 | 352.585416 | -28.0 | -406.000 | 0.0 |
| 0 | Report_Dt | Illness_Onset_Dt | 507592 | 53.85 | -66472.0 | 66481.0 | 11.089239 | 235.473089 | 5.0 | 0.000 | 49.0 |
| 0 | Report_Dt | Invest_Start_Dt | 743535 | 78.88 | -27174.0 | 66472.0 | -3.342519 | 130.235759 | 0.0 | -28.000 | 0.0 |
| 0 | Report_Dt | Illness_End_Dt_str | 8415 | 0.89 | -24298.0 | 6220.0 | -11.445092 | 352.275508 | -4.0 | -32.000 | 12.0 |
| 0 | Report_Dt | PHD_Notif_Dt | 843807 | 89.52 | -20205.0 | 3286.0 | -0.349828 | 35.468538 | 0.0 | -4.000 | 0.0 |
| 0 | Report_Dt | Earliest_Cnty_Dt | 372103 | 39.48 | -20205.0 | 6544.0 | -1.939527 | 83.793963 | 0.0 | -9.000 | 0.0 |
| 0 | Report_Dt | mvps_datetime_created | 942582 | 100.00 | -27175.0 | 66434.0 | -236.166470 | 446.104187 | -188.0 | -633.000 | -1.0 |
| 0 | Report_Dt | Elect_Notif_CDC_Dt | 942582 | 100.00 | -27175.0 | 66438.0 | -225.418136 | 443.967217 | -176.0 | -555.000 | -1.0 |
| 0 | Report_Dt | Hosp_Admit_Dt | 81267 | 8.62 | -32871.0 | 43114.0 | 7.426298 | 233.171151 | 3.0 | -4.000 | 40.0 |
| 0 | Report_Dt | Diag_Dt | 645161 | 68.45 | -66472.0 | 66481.0 | 7.367129 | 251.897877 | 3.0 | -2.000 | 37.0 |
| 0 | Report_Dt | Hosp_Dis_Dt | 60418 | 6.41 | -32876.0 | 43945.0 | 5.251916 | 485.966371 | 0.0 | -18.000 | 39.0 |
| 0 | Report_Dt | msg_received_dttm | 942582 | 100.00 | -27175.0 | 66434.0 | -228.485871 | 443.887949 | -181.0 | -557.000 | -1.0 |
| 0 | Report_Dt | Earliest_State_Dt | 739578 | 78.46 | -20205.0 | 23489.0 | -0.289480 | 65.785354 | 0.0 | -6.000 | 2.0 |
| 0 | Report_Dt | mvps_datetime_updated | 97030 | 10.29 | -27176.0 | 232.0 | -149.245811 | 470.675239 | -18.0 | -570.000 | -1.0 |
| 0 | Report_Dt | MMWR_Year | 942306 | 99.97 | -27061.0 | 66642.0 | 170.798499 | 183.963135 | 156.0 | 11.000 | 353.0 |
| 0 | First_Elec_Submit_Dt | Illness_Onset_Dt | 507592 | 53.85 | -66409.0 | 29265.0 | 79.726140 | 286.457694 | 34.0 | 4.000 | 381.0 |
| 0 | First_Elec_Submit_Dt | Invest_Start_Dt | 743535 | 78.88 | -3399.0 | 35628.0 | 101.213616 | 362.722643 | 24.0 | 0.000 | 391.0 |
| 0 | First_Elec_Submit_Dt | Illness_End_Dt_str | 8415 | 0.89 | -24295.0 | 6228.0 | 4.427858 | 276.542013 | 3.0 | -12.000 | 47.0 |
| 0 | First_Elec_Submit_Dt | PHD_Notif_Dt | 843807 | 89.52 | -66438.0 | 27174.0 | 90.686151 | 215.647364 | 31.0 | 0.000 | 396.0 |
| 0 | First_Elec_Submit_Dt | Earliest_Cnty_Dt | 372103 | 39.48 | -404.0 | 9615.0 | 83.268213 | 208.802814 | 8.0 | 0.000 | 431.0 |
| 0 | First_Elec_Submit_Dt | mvps_datetime_created | 942582 | 100.00 | -4734.0 | 0.0 | -130.055047 | 197.186335 | -38.0 | -522.000 | 0.0 |
| 0 | First_Elec_Submit_Dt | Elect_Notif_CDC_Dt | 942582 | 100.00 | -4734.0 | 509.0 | -119.306712 | 191.009270 | -18.0 | -492.000 | 0.0 |
| 0 | First_Elec_Submit_Dt | Hosp_Admit_Dt | 81267 | 8.62 | -32868.0 | 43162.0 | 89.592651 | 310.190722 | 18.0 | 1.000 | 493.0 |
| 0 | First_Elec_Submit_Dt | Diag_Dt | 645161 | 68.45 | -66409.0 | 35814.0 | 113.566315 | 423.037276 | 36.0 | 2.000 | 436.0 |
| 0 | First_Elec_Submit_Dt | Hosp_Dis_Dt | 60418 | 6.41 | -32875.0 | 43958.0 | 89.744492 | 527.432080 | 16.0 | -6.000 | 484.0 |
| 0 | First_Elec_Submit_Dt | msg_received_dttm | 942582 | 100.00 | -4734.0 | 0.0 | -122.374447 | 190.661306 | -28.0 | -494.000 | 0.0 |
| 0 | First_Elec_Submit_Dt | Earliest_State_Dt | 739578 | 78.46 | -66438.0 | 23575.0 | 100.231256 | 376.125285 | 28.0 | 0.000 | 420.0 |
| 0 | First_Elec_Submit_Dt | mvps_datetime_updated | 97030 | 10.29 | -3399.0 | 0.0 | -98.631361 | 194.548743 | -8.0 | -474.000 | 0.0 |
| 0 | First_Elec_Submit_Dt | MMWR_Year | 942306 | 99.97 | -491.0 | 28237.0 | 276.846982 | 356.064723 | 252.0 | 36.000 | 486.0 |
| 0 | Illness_Onset_Dt | Invest_Start_Dt | 455749 | 48.35 | -29236.0 | 66456.0 | -13.555275 | 226.467449 | -6.0 | -62.000 | -1.0 |
| 0 | Illness_Onset_Dt | Illness_End_Dt_str | 8377 | 0.89 | -24300.0 | 6202.0 | -15.487225 | 276.685721 | -8.0 | -46.000 | -2.0 |
| 0 | Illness_Onset_Dt | PHD_Notif_Dt | 462100 | 49.02 | -66481.0 | 66472.0 | -11.388734 | 247.742043 | -5.0 | -48.000 | 0.0 |
| 0 | Illness_Onset_Dt | Earliest_Cnty_Dt | 165175 | 17.52 | -29236.0 | 6601.0 | -20.615795 | 233.409820 | -8.0 | -72.000 | -2.0 |
| 0 | Illness_Onset_Dt | mvps_datetime_created | 507592 | 53.85 | -29797.0 | 66409.0 | -239.296041 | 323.534648 | -215.0 | -604.000 | -9.0 |
| 0 | Illness_Onset_Dt | Elect_Notif_CDC_Dt | 507592 | 53.85 | -29545.0 | 66409.0 | -224.134427 | 318.423891 | -203.0 | -544.000 | -8.0 |
| 0 | Illness_Onset_Dt | Hosp_Admit_Dt | 71824 | 7.62 | -10617.0 | 43093.0 | -4.735130 | 191.521652 | -3.0 | -28.000 | 2.0 |
| 0 | Illness_Onset_Dt | Diag_Dt | 415950 | 44.13 | -32884.0 | 35792.0 | -4.800509 | 201.207078 | 0.0 | -25.000 | 0.0 |
| 0 | Illness_Onset_Dt | Hosp_Dis_Dt | 54502 | 5.78 | -32882.0 | 43868.0 | -9.456560 | 388.646150 | -7.0 | -37.000 | -1.0 |
| 0 | Illness_Onset_Dt | msg_received_dttm | 507592 | 53.85 | -29545.0 | 66409.0 | -227.169940 | 318.019648 | -207.0 | -546.000 | -8.0 |
| 0 | Illness_Onset_Dt | Earliest_State_Dt | 445259 | 47.24 | -66481.0 | 66472.0 | -11.601780 | 255.438227 | -5.0 | -49.000 | 0.0 |
| 0 | Illness_Onset_Dt | mvps_datetime_updated | 38519 | 4.09 | -28175.0 | 209.0 | -138.882759 | 291.237345 | -32.0 | -630.000 | -7.0 |
| 0 | Illness_Onset_Dt | MMWR_Year | 507326 | 53.82 | -29042.0 | 66748.0 | 164.789116 | 205.372885 | 161.0 | 7.000 | 347.0 |
| 0 | Invest_Start_Dt | Illness_End_Dt_str | 8340 | 0.88 | -24296.0 | 6223.0 | -2.384818 | 276.488784 | 1.0 | -15.000 | 19.0 |
| 0 | Invest_Start_Dt | PHD_Notif_Dt | 657151 | 69.72 | -66472.0 | 27174.0 | 2.215963 | 119.575624 | 0.0 | 0.000 | 24.0 |
| 0 | Invest_Start_Dt | Earliest_Cnty_Dt | 216294 | 22.95 | -35623.0 | 6622.0 | -1.419762 | 128.209535 | 0.0 | 0.000 | 8.0 |
| 0 | Invest_Start_Dt | mvps_datetime_created | 743535 | 78.88 | -35695.0 | 3029.0 | -249.691996 | 470.167788 | -200.0 | -646.000 | -1.0 |
| 0 | Invest_Start_Dt | Elect_Notif_CDC_Dt | 743535 | 78.88 | -35628.0 | 3029.0 | -239.217218 | 467.693855 | -192.0 | -553.000 | 0.0 |
| 0 | Invest_Start_Dt | Hosp_Admit_Dt | 62685 | 6.65 | -32871.0 | 43137.0 | 7.517077 | 249.549188 | 4.0 | -1.000 | 33.0 |
| 0 | Invest_Start_Dt | Diag_Dt | 539754 | 57.26 | -66456.0 | 35801.0 | 10.481527 | 240.787591 | 4.0 | 0.000 | 57.0 |
| 0 | Invest_Start_Dt | Hosp_Dis_Dt | 45055 | 4.78 | -3892.0 | 43882.0 | 7.132083 | 465.673750 | 1.0 | -15.000 | 28.0 |
| 0 | Invest_Start_Dt | msg_received_dttm | 743535 | 78.88 | -35679.0 | 3029.0 | -241.097780 | 467.814799 | -195.0 | -555.000 | -1.0 |
| 0 | Invest_Start_Dt | Earliest_State_Dt | 565111 | 59.95 | -66472.0 | 23489.0 | 3.076360 | 146.847142 | 0.0 | 0.000 | 31.0 |
| 0 | Invest_Start_Dt | mvps_datetime_updated | 72416 | 7.68 | -10252.0 | 1457.0 | -151.326779 | 510.863557 | -16.0 | -482.000 | -1.0 |
| 0 | Invest_Start_Dt | MMWR_Year | 743259 | 78.85 | -35305.0 | 28213.0 | 173.111396 | 156.396063 | 158.0 | 13.000 | 357.0 |
| 0 | Illness_End_Dt_str | PHD_Notif_Dt | 8242 | 0.87 | -6220.0 | 24296.0 | 5.244509 | 355.297691 | 0.0 | -19.000 | 15.0 |
| 0 | Illness_End_Dt_str | Earliest_Cnty_Dt | 7455 | 0.79 | -6220.0 | 24296.0 | 3.132815 | 292.386963 | 0.0 | -20.000 | 16.0 |
| 0 | Illness_End_Dt_str | mvps_datetime_created | 8415 | 0.89 | -6241.0 | 24204.0 | -97.027217 | 311.556962 | -29.0 | -448.000 | 0.0 |
| 0 | Illness_End_Dt_str | Elect_Notif_CDC_Dt | 8415 | 0.89 | -6240.0 | 24204.0 | -94.923342 | 311.363441 | -28.0 | -448.000 | 0.0 |
| 0 | Illness_End_Dt_str | Hosp_Admit_Dt | 1439 | 0.15 | -324.0 | 426.0 | 6.618485 | 19.471522 | 4.0 | 0.000 | 25.0 |
| 0 | Illness_End_Dt_str | Diag_Dt | 6093 | 0.65 | -364.0 | 24298.0 | 8.946159 | 313.420914 | 3.0 | -10.000 | 21.0 |
| 0 | Illness_End_Dt_str | Hosp_Dis_Dt | 1360 | 0.14 | -395.0 | 287.0 | 2.040441 | 17.638275 | 0.0 | -9.000 | 17.0 |
| 0 | Illness_End_Dt_str | msg_received_dttm | 8415 | 0.89 | -6241.0 | 24204.0 | -95.376159 | 311.374488 | -29.0 | -448.000 | 0.0 |
| 0 | Illness_End_Dt_str | Earliest_State_Dt | 7369 | 0.78 | -6220.0 | 24296.0 | 3.036916 | 294.127649 | 0.0 | -20.000 | 16.0 |
| 0 | Illness_End_Dt_str | mvps_datetime_updated | 1317 | 0.14 | -3417.0 | 256.0 | -176.903569 | 192.258301 | -154.0 | -496.000 | -2.0 |
| 0 | Illness_End_Dt_str | MMWR_Year | 8415 | 0.89 | -5975.0 | 24409.0 | 175.004160 | 290.934729 | 160.0 | 16.000 | 357.0 |
| 0 | PHD_Notif_Dt | Earliest_Cnty_Dt | 346307 | 36.74 | -20079.0 | 21.0 | -1.130413 | 66.478740 | 0.0 | 0.000 | 0.0 |
| 0 | PHD_Notif_Dt | mvps_datetime_created | 843807 | 89.52 | -27175.0 | 66434.0 | -216.480519 | 248.857153 | -200.0 | -557.000 | -1.0 |
| 0 | PHD_Notif_Dt | Elect_Notif_CDC_Dt | 843807 | 89.52 | -27175.0 | 66438.0 | -205.812336 | 244.142162 | -191.0 | -523.000 | -1.0 |
| 0 | PHD_Notif_Dt | Hosp_Admit_Dt | 66273 | 7.03 | -32871.0 | 43114.0 | 7.940881 | 254.232101 | 3.0 | -2.000 | 39.0 |
| 0 | PHD_Notif_Dt | Diag_Dt | 586757 | 62.25 | -66472.0 | 66481.0 | 6.989868 | 254.066467 | 3.0 | 0.000 | 31.0 |
| 0 | PHD_Notif_Dt | Hosp_Dis_Dt | 48953 | 5.19 | -32868.0 | 43945.0 | 7.066718 | 517.812241 | 1.0 | -16.000 | 37.0 |
| 0 | PHD_Notif_Dt | msg_received_dttm | 843807 | 89.52 | -27175.0 | 66434.0 | -208.330583 | 243.917889 | -194.0 | -525.000 | -1.0 |
| 0 | PHD_Notif_Dt | Earliest_State_Dt | 665461 | 70.60 | -3653.0 | 23489.0 | 0.282730 | 31.939674 | 0.0 | 0.000 | 3.0 |
| 0 | PHD_Notif_Dt | mvps_datetime_updated | 87652 | 9.30 | -27176.0 | 232.0 | -113.514090 | 196.704583 | -18.0 | -471.000 | -1.0 |
| 0 | PHD_Notif_Dt | MMWR_Year | 843807 | 89.52 | -27061.0 | 66642.0 | 171.572521 | 190.900494 | 157.0 | 12.000 | 354.0 |
| 0 | Earliest_Cnty_Dt | mvps_datetime_created | 372103 | 39.48 | -10942.0 | 310.0 | -192.589748 | 251.584091 | -133.0 | -672.000 | -1.0 |
| 0 | Earliest_Cnty_Dt | Elect_Notif_CDC_Dt | 372103 | 39.48 | -10942.0 | 310.0 | -171.667635 | 241.966263 | -106.0 | -574.000 | -1.0 |
| 0 | Earliest_Cnty_Dt | Hosp_Admit_Dt | 45320 | 4.81 | -3270.0 | 22353.0 | 9.005847 | 132.426594 | 4.0 | 0.000 | 43.0 |
| 0 | Earliest_Cnty_Dt | Diag_Dt | 257094 | 27.28 | -32866.0 | 24005.0 | 10.553488 | 215.981934 | 3.0 | 0.000 | 36.0 |
| 0 | Earliest_Cnty_Dt | Hosp_Dis_Dt | 34509 | 3.66 | -32868.0 | 1121.0 | 2.220760 | 181.472959 | 1.0 | -15.000 | 40.0 |
| 0 | Earliest_Cnty_Dt | msg_received_dttm | 372103 | 39.48 | -10942.0 | 310.0 | -177.445608 | 241.425399 | -121.0 | -575.000 | -1.0 |
| 0 | Earliest_Cnty_Dt | Earliest_State_Dt | 369416 | 39.19 | -3653.0 | 8257.0 | 0.688535 | 56.276363 | 0.0 | -1.000 | 2.0 |
| 0 | Earliest_Cnty_Dt | mvps_datetime_updated | 40648 | 4.31 | -6626.0 | 220.0 | -184.483911 | 199.700770 | -159.0 | -492.000 | -1.0 |
| 0 | Earliest_Cnty_Dt | MMWR_Year | 372103 | 39.48 | -6511.0 | 20513.0 | 177.015799 | 172.227441 | 169.0 | 13.000 | 357.0 |
| 0 | mvps_datetime_created | Elect_Notif_CDC_Dt | 942582 | 100.00 | 0.0 | 509.0 | 10.748335 | 44.953436 | 0.0 | 0.000 | 174.0 |
| 0 | mvps_datetime_created | Hosp_Admit_Dt | 81267 | 8.62 | -32595.0 | 43258.0 | 192.462672 | 351.406781 | 111.0 | 6.000 | 684.0 |
| 0 | mvps_datetime_created | Diag_Dt | 645161 | 68.45 | -66409.0 | 36078.0 | 274.925809 | 527.639741 | 227.0 | 6.000 | 651.0 |
| 0 | mvps_datetime_created | Hosp_Dis_Dt | 60418 | 6.41 | -32758.0 | 43972.0 | 201.151563 | 554.983238 | 123.0 | 4.000 | 685.0 |
| 0 | mvps_datetime_created | msg_received_dttm | 942582 | 100.00 | 0.0 | 321.0 | 7.680600 | 40.871492 | 0.0 | 0.000 | 108.0 |
| 0 | mvps_datetime_created | Earliest_State_Dt | 739578 | 78.46 | -66434.0 | 23582.0 | 253.595968 | 482.285201 | 204.0 | 1.000 | 665.0 |
| 0 | mvps_datetime_created | mvps_datetime_updated | 97030 | 10.29 | -3.0 | 0.0 | -1.008472 | 0.877818 | -1.0 | -3.000 | 0.0 |
| 0 | mvps_datetime_created | MMWR_Year | 942306 | 99.97 | 0.0 | 28237.0 | 406.901293 | 445.703052 | 408.0 | 79.000 | 784.0 |
| 0 | Elect_Notif_CDC_Dt | Hosp_Admit_Dt | 81267 | 8.62 | -32595.0 | 43257.0 | 169.102083 | 342.880404 | 87.0 | 5.000 | 634.0 |
| 0 | Elect_Notif_CDC_Dt | Diag_Dt | 645161 | 68.45 | -66409.0 | 36077.0 | 266.027609 | 526.613198 | 220.0 | 4.000 | 594.0 |
| 0 | Elect_Notif_CDC_Dt | Hosp_Dis_Dt | 60418 | 6.41 | -32758.0 | 43972.0 | 174.934075 | 549.492597 | 97.0 | 3.000 | 639.0 |
| 0 | Elect_Notif_CDC_Dt | msg_received_dttm | 942582 | 100.00 | -509.0 | 0.0 | -3.067735 | 15.360005 | 0.0 | -21.000 | 0.0 |
| 0 | Elect_Notif_CDC_Dt | Earliest_State_Dt | 739578 | 78.46 | -66438.0 | 23575.0 | 240.748828 | 480.407490 | 191.0 | 1.000 | 579.0 |
| 0 | Elect_Notif_CDC_Dt | mvps_datetime_updated | 97030 | 10.29 | -509.0 | 0.0 | -1.893579 | 12.773159 | -1.0 | -7.000 | 0.0 |
| 0 | Elect_Notif_CDC_Dt | MMWR_Year | 942306 | 99.97 | -2.0 | 28237.0 | 396.149815 | 443.180017 | 406.0 | 78.000 | 784.0 |
| 0 | Hosp_Admit_Dt | Diag_Dt | 57575 | 6.11 | -43102.0 | 32872.0 | -1.651359 | 362.541689 | -1.0 | -14.000 | 4.0 |
| 0 | Hosp_Admit_Dt | Hosp_Dis_Dt | 60159 | 6.38 | -43125.0 | 43946.0 | -2.533196 | 527.935461 | -3.0 | -21.000 | 0.0 |
| 0 | Hosp_Admit_Dt | msg_received_dttm | 81267 | 8.62 | -43258.0 | 32595.0 | -174.301389 | 342.588790 | -99.0 | -634.000 | -6.0 |
| 0 | Hosp_Admit_Dt | Earliest_State_Dt | 63534 | 6.74 | -22353.0 | 23483.0 | -7.960147 | 155.850882 | -3.0 | -43.000 | 1.0 |
| 0 | Hosp_Admit_Dt | mvps_datetime_updated | 10366 | 1.10 | -22355.0 | 1.0 | -162.175188 | 320.996187 | -33.0 | -682.875 | -5.0 |
| 0 | Hosp_Admit_Dt | MMWR_Year | 81023 | 8.60 | -42777.0 | 33069.0 | 175.450921 | 245.970534 | 177.0 | 13.000 | 351.0 |
| 0 | Diag_Dt | Hosp_Dis_Dt | 43128 | 4.58 | -32872.0 | 43946.0 | 0.302177 | 589.321663 | -2.0 | -19.000 | 8.0 |
| 0 | Diag_Dt | msg_received_dttm | 645161 | 68.45 | -36078.0 | 66409.0 | -268.482246 | 526.635829 | -222.0 | -595.000 | -5.0 |
| 0 | Diag_Dt | Earliest_State_Dt | 599724 | 63.63 | -66481.0 | 66472.0 | -7.781646 | 235.344172 | -3.0 | -40.000 | 0.0 |
| 0 | Diag_Dt | mvps_datetime_updated | 47567 | 5.05 | -32902.0 | 348.0 | -253.081023 | 661.672257 | -161.0 | -713.000 | -4.0 |
| 0 | Diag_Dt | MMWR_Year | 644972 | 68.43 | -35597.0 | 66748.0 | 166.791051 | 256.471901 | 164.0 | 6.000 | 350.0 |
| 0 | Hosp_Dis_Dt | msg_received_dttm | 60418 | 6.41 | -43972.0 | 32758.0 | -180.632008 | 549.179786 | -109.0 | -639.600 | -4.0 |
| 0 | Hosp_Dis_Dt | Earliest_State_Dt | 48112 | 5.10 | -11322.0 | 32868.0 | -1.679179 | 196.684668 | -1.0 | -40.000 | 16.0 |
| 0 | Hosp_Dis_Dt | mvps_datetime_updated | 6255 | 0.66 | -43888.0 | 10.0 | -204.830828 | 614.590110 | -98.0 | -727.000 | -4.0 |
| 0 | Hosp_Dis_Dt | MMWR_Year | 60273 | 6.39 | -43863.0 | 33114.0 | 183.761498 | 490.709635 | 191.0 | 17.000 | 357.0 |
| 0 | msg_received_dttm | Earliest_State_Dt | 739578 | 78.46 | -66434.0 | 23582.0 | 244.348393 | 480.212783 | 196.0 | 1.000 | 581.0 |
| 0 | msg_received_dttm | mvps_datetime_updated | 97030 | 10.29 | -3.0 | 0.0 | -1.008472 | 0.877818 | -1.0 | -3.000 | 0.0 |
| 0 | msg_received_dttm | MMWR_Year | 942306 | 99.97 | 0.0 | 28237.0 | 399.218444 | 443.108016 | 408.0 | 79.000 | 784.0 |
| 0 | Earliest_State_Dt | mvps_datetime_updated | 55231 | 5.86 | -10252.0 | 232.0 | -237.821948 | 577.376976 | -158.0 | -631.000 | -1.0 |
| 0 | Earliest_State_Dt | MMWR_Year | 739578 | 78.46 | -23272.0 | 66642.0 | 175.646091 | 207.673489 | 170.0 | 10.000 | 356.0 |
| 0 | mvps_datetime_updated | MMWR_Year | 97030 | 10.29 | 115.0 | 28239.0 | 283.710461 | 486.399793 | 117.0 | 115.000 | 873.0 |
# Export table
date_sequences.to_csv('./datasets/date_sequence_distributions.csv', index = False)